Biocview "DifferentialSplicing"

alpine

Analysis of alternative splicing using RNA-Seq

Analysis of Alternative Splicing Using RNA-Seq

An effective identification of alternative splicing events using junction arrays and RNA-Seq data

An R Package for Adjusting Bias in Gene Set Enrichment Analysis

An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms

An R Package for Unbiased Splicing Pathway Analysis

An R Package for Unbiased Splicing Pathway Analysis in RNAseq data

Assess Differential Gene Expression Experiments with ERCC Controls

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Classification of alternative splicing and prediction of coding potential from RNA-seq data.

Core Engine for NxtIRF: a User-Friendly Intron Retention and Alternative Splicing Analysis using the IRFinder Engine

Differentially regulated genes from scRNA-seq data

Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq

Discriminant Analysis for Evolutionary Inference

Empirical Analysis of Digital Gene Expression Data in R

Estimate Promoter Activity from RNA-Seq data

ExCluster robustly detects differentially expressed exons between two conditions of RNA-seq data, requiring at least two independent biological replicates per condition

Fishpond: differential transcript and gene expression with inferential replicates

Fishpond: downstream methods and tools for expression data

Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing

Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Graphical User Interface for High Performance BAM-based binary alternative splicing event quantitation, differential analysis, and visualisation

Identification of genetic Variants affecting Alternative Splicing

Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.

Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data

ImagingAMARETTO: tools for interpreting multi-omics networks for relevance to clinical outcomes and radiographic and histopathology imaging-derived biomarkers

Inference of differential exon usage in RNA-Seq

InPAS: a bioconductor package for the identification of novel alternative PolyAdenylation Sites (PAS) using RNA-seq data

Integrative analysis of Multi-omics data for Alternative Splicing

interactive analysis and visualization of alternative splicing in R

Intron-Exon Retention Estimator

L1-regularization based methods for detection of differential splicing

Linear Models for Microarray Data

Multiple Beta t-Tests

Negative Binomial Beta t-Test

Negative Binomial Models to detect Differential Splicing

Probe-level Expression Change Averaging

Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)

Quantification and Visualization of Variations of Splicing in Population

Quantification and Visulization of Variations of Splicing in Population

Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression

Retrieves Condition-Specific Variants in RNA-Seq Data

Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)

Splicing Diversity Analysis for Transcriptome Data

Tools for spliced gene structure manipulation and analysis

Transcript expression inference and differential expression analysis for RNA-seq data

Transcriptome instability analysis

Biocview "DifferentialSplicing"

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