Files in minzheguo/SINCERA

An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

R/celltype.R R/drivingforce.R R/plotting.R R/preprocessing.R R/signature.R R/sincera.R README.md demo/humanIPF.R demo/mouselung.e16.5.R man/GeneStats.Rd man/batch.analysis.ISCCD.Rd man/batch.analysis.MA.Rd man/batch.analysis.QQ.Rd man/batch.analysis.Rd man/celltype.enrichment.Rd man/celltype.enrichment.initKB.Rd man/celltype.validation.Rd man/cluster.assignment.Rd man/cluster.diffgenes.Rd man/cluster.geneSelection.Rd man/cluster.ordering.Rd man/cluster.permutation.analysis.1.Rd man/cluster.permutation.analysis.Rd man/clusterings.compare.Rd man/consensus_maximization.Rd man/construct.Rd man/copyCellMeta.Rd man/copyGeneMeta.Rd man/doPCA.Rd man/doTSNE.Rd man/drivingforce.getLCC.Rd man/drivingforce.inferTRN.Rd man/drivingforce.rankTFs.Rd man/drivingforce.selectTFs.Rd man/drivingforce.selectTGs.Rd man/expr.minimum.Rd man/exprs.common.Rd man/exprs.specificity.Rd man/exprs.synthetic.similarity.Rd man/exprs.test.statistic.metric.Rd man/exprs.unique.Rd man/filterContaminatedCells.Rd man/filterLowQualityCells.Rd man/getCellMeta.Rd man/getCellNum.Rd man/getCellType.Rd man/getCellTypeMarkers.Rd man/getCells.Rd man/getExprQuantiles.Rd man/getExpression.Rd man/getGeneMeta.Rd man/getGeneNum.Rd man/getGenes.Rd man/getGenesForClustering.Rd man/getNodesImportance.Rd man/getPCA.Rd man/hello.Rd man/network.inference.Rd man/normalization.log.Rd man/normalization.sqrt.Rd man/normalization.trimmed.mean.Rd man/normalization.zscore.1.Rd man/normalization.zscore.Rd man/plotCellTypeEnrichment.Rd man/plotHC.Rd man/plotHeatmap.Rd man/plotMarkers.Rd man/plotPCASD.Rd man/plotRDS.Rd man/prefilterGenes.Rd man/setCellMeta.Rd man/setCellNames.Rd man/setCellType.Rd man/setCellTypeMarkers.Rd man/setExpression.Rd man/setGeneMeta.Rd man/setGeneNames.Rd man/setGenesForClustering.Rd man/setPCA.Rd man/signature.prediction.1.Rd man/signature.prediction.Rd man/signature.validation.Rd man/sigpred.testing.sets.Rd man/sigpred.training.sets.Rd man/sincera.Rd man/specificity.criterion.selection.Rd man/specificity.thresholdSelection.Rd