Biocview "CellBiology"

Add-on to CellNOptR: Discretized time treatments

An R interface for computational modeling of tumor progression

An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms

A Toolkit for Flow And Mass Cytometry Data

Bayesian Analysis of Single-Cell Sequencing data

BraDiPluS - Braille Display Plugs Data Analysis

Calculate growth-rate inhibition (GR) metrics

Cell birth and death rates estimation

cell counter

Cell OrderiNg by FluorEScence Signal

Clonogenic Survival Analysis in R made easy!

cn.mops - Mixture of Poissons for CNV detection in NGS data

CNV detection tool for targeted NGS panel data

Compare Patient Samples to Cell Line Models Using Molecular Data and Weighted Similarity

Comparing tumour copy number profiles

Comparison between multiple levels of gene expression

Conditional Differential Analysis for Flow and Mass Cytometry Experiments

Convex Analysis of Mixtures for Tissue Heterogeneity Characterization

Convex Analysis of Mixtures Version 3

CopyKit

COSMOS (Causal Oriented Search of Multi-Omic Space)

Creates diffusion maps

Creates hatched patterns for scatterplots

CRImage a package to classify cells and calculate tumour cellularity

cytofkit2: an integrated mass cytometry data analysis pipeline. Cytofkit provides functions for data pre-processing, fast clustering, data visualization through linear or non-linear dimensionality reduction, automatic identification of cell subsets, and inference of the relatedness between cell subsets

cytofkit: an integrated mass cytometry data analysis pipeline

Deconvolution by Convex Analysis of Mixtures

Delineate outstanding genomic zones of differential gene activity

DEXUS - Identifying Differential Expression in RNA-Seq Studies with Unknown Conditions or without Replicates

Differential abundance analysis with a right censored covariate in high-dimensional cytometry

Differential cell-type-specific allelic imbalance

Differential discovery in high-dimensional cytometry via high-resolution clustering

Differential expression analysis and model fitting for single-cell RNA-seq data

Differential Expression Analysis for RNA-seq data through a robust variance component test

Differential expression analysis of longitudinal count data sets

Empirical Analysis of Digital Gene Expression Data in R

Exploratory Analysis of ATAC-seq data

Finding Co-occuring motifs of transcription factor binding sites

FISHalyseR a package for automated FISH quantification

Functional Network Analysis

functions for genome-wide application of Liquid Association

Gaussian mixture modeling for heavy-tailed distributions in Flow Cytometry data

Human Protein Atlas in R

Identifies cell population in flow cytometry data.

immunological Elastic-Net model, implementation and optimization

Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure

Integration of CellNOptR to add missing links

Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection

k-nearest neighbour batch effect test

Landscape Single Cell Entropy

Linear Models for Microarray Data

LiquidAssociation

Marker Enrichment Modeling (MEM)

MetaCyto: A package for meta-analysis of cytometry data

Multiview Intercellular SpaTial modeling framework

Non-parametric Flow Cytometry Data Gating

ODE add-on to CellNOptR

OVESEG-test to detect tissue/cell-specific markers

Perform co-DE gene analysis

Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections

Prize: an R package for prioritization estimation based on analytic hierarchy process

Profiling and Analyzing Intrinsically Disordered Proteins in R

Projection-based Gating Strategy Optimization for Flow and Mass Cytometry

Regression Models with Multivariate Outcomes for Mass Cytometry Experiments

Retrieve and analyze data from the Human Protein Atlas

Robust prediction of clinical outcomes using cytometry data without cell gating

R package for immunogenomics data handling and association analysis

R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data

Sequential Flow Cytometry Data Gating

Single Cell Entropy

spatialHeatmap

Spatial Image Analysis of Tissues

Stability Ranking

Stan implementation of BASiCS

Statistical analysis for the Colony Formation Assay

Statistical Analysis of MPRA data

Suite of Functions for Pooled Crispr Screen QC and Analysis

Ternary Network Estimation

Tools for the Analysis of Ratiometric Data

Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells

Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells.

tool to run PHONEMeS on phosphoproteomic data

Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

Using self-organizing maps for visualization and interpretation of cytometry data

uSORT: A self-refining ordering pipeline for gene selection

Visualize all edges within a KEGG pathway and overlay LINCS data

Visualize all edges within a KEGG pathway and overlay LINCS data [option]

Biocview "CellBiology"

R Package Documentation

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