API for familiar
End-to-End Automated Machine Learning and Model Evaluation

Global functions
...collect_and_aggregate_normalisation_info	Source code
...compute_ensemble_estimates	Source code
...extract_ice_data	Source code
..add_cluster_info	Source code
..aggregate_confusion_matrix	Source code
..aggregate_confusion_matrix_score	Source code
..anchor_ice_values_1D	Source code
..anchor_ice_values_2D	Source code
..arrange_plot_grobs	Source code
..auto_stack	Source code
..bootstrap_bias_correction	Source code
..bootstrap_ci	Source code
..collect_and_aggregate_batch_normalisation_info	Source code
..collect_and_aggregate_imputation_info	Source code
..collect_and_aggregate_normalisation_info	Source code
..collect_and_aggregate_transformation_info	Source code
..combat_delta_squared_posterior	Source code
..combat_gamma_posterior	Source code
..combat_iterative_parametric_bayes_solver	Source code
..combat_lambda_prior	Source code
..combat_non_parametric_bayes_solver	Source code
..combat_theta_prior	Source code
..compare_hyperparameter_optimisation_scores	Source code
..compute_auc_data_categorical	Source code
..compute_bias_corrected_estimate	Source code
..compute_bootstrap_confidence_estimate	Source code
..compute_calibration_data_categorical	Source code
..compute_calibration_data_interpolated	Source code
..compute_calibration_data_regression	Source code
..compute_calibration_data_survival	Source code
..compute_calibration_fit	Source code
..compute_calibration_test_statistic	Source code
..compute_concordance_index	Source code
..compute_confusion_matrix_data	Source code
..compute_dca_data_net_benefit	Source code
..compute_dca_data_net_benefit_survival	Source code
..compute_effective_number_of_samples_beta	Source code
..compute_ensemble_default_estimates	Source code
..compute_ensemble_novelty_estimates	Source code
..compute_ensemble_risk_stratification	Source code
..compute_ensemble_survival_probability_estimates	Source code
..compute_hyperparameter_model_performance	Source code
..compute_hyperparameter_variable_importance	Source code
..compute_mutual_information	Source code
..compute_mutual_information_any_survival	Source code
..compute_mutual_information_conditional_probability	Source code
..compute_mutual_information_continuous_continuous	Source code
..compute_mutual_information_continuous_discrete	Source code
..compute_mutual_information_discrete_discrete	Source code
..compute_permutation_vimp	Source code
..compute_risk_stratification_curves	Source code
..compute_risk_stratification_hazard_ratio_test	Source code
..compute_risk_stratification_logrank_test	Source code
..convert_cluster_table_to_cluster_objects	Source code
..create_batch_normalisation_parameter_skeleton	Source code
..create_hyperparameter_intensify_run_table	Source code
..create_hyperparameter_run_table	Source code
..create_ice_plot_novelty_range	Source code
..create_ice_plot_value_range	Source code
..create_imputation_parameter_skeleton	Source code
..create_initial_hyperparameter_set	Source code
..create_normalisation_parameter_skeleton	Source code
..create_transformation_parameter_skeleton	Source code
..deprecation_count	Source code
..deprecation_mboost	Source code
..deprecation_qvalue	Source code
..deprecation_vgam	Source code
..determine_mi_variable_type	Source code
..draw_plot	Source code
..encode_categorical_hyperparameters	Source code
..error_cannot_convert_to_familiar_object	Source code
..error_data_set_has_no_features	Source code
..error_data_set_is_empty	Source code
..error_ensemble_models_not_loaded	Source code
..error_input_missing_without_default	Source code
..error_input_not_unique	Source code
..error_message_failed_model_coefficient_estimation	Source code
..error_message_no_features_selected_for_training	Source code
..error_message_no_optimised_hyperparameters_available	Source code
..error_message_no_training_data_available	Source code
..error_no_known_outcome_type	Source code
..error_no_predictions_possible	Source code
..error_outcome_type_not_implemented	Source code
..error_package_not_installed	Source code
..error_reached_unreachable_code	Source code
..error_type_conversion_not_possible	Source code
..error_type_not_valid	Source code
..error_value_not_allowed	Source code
..error_value_outside_allowed_range	Source code
..error_value_shared_between_variables	Source code
..error_variable_has_too_few_values	Source code
..error_variable_has_too_many_values	Source code
..export_vimp_data_elements	Source code
..extract_calibration_data	Source code
..extract_feature_similarity	Source code
..extract_ice_data	Source code
..extract_model_performance_data	Source code
..extract_permutation_vimp	Source code
..extract_predictions	Source code
..extract_risk_stratification_data	Source code
..fam_rnorm	Source code
..fam_sample	Source code
..find_kernel_type	Source code
..get_available_svm_kernels	Source code
..get_plot_element_spacing	Source code
..get_plot_theme_linewidth	Source code
..get_replacement_optimisation_score	Source code
..get_survival_breakpoints	Source code
..hyperparameter_random_forest_time_learner	Source code
..hyperparameter_to_string	Source code
..impute_features	Source code
..insert_global_plot_grobs	Source code
..interpolate_survival_data	Source code
..limit_sample_similarity_samples	Source code
..message_dispatcher_details	Source code
..message_install_from_bioconductor	Source code
..message_install_from_cran	Source code
..message_missing_package	Source code
..message_package_not_installed_to_backend	Source code
..message_package_version	Source code
..optimisation_function_validation_minus_sd	Source code
..optimisation_score_balanced	Source code
..optimisation_score_max_validation	Source code
..optimisation_score_stronger_balance	Source code
..optimise_cluster_silhouette	Source code
..parse_categorical_as_is	Source code
..parse_categorical_most_frequent	Source code
..parse_categorical_sorted	Source code
..parse_optimisation_summary_to_string	Source code
..plot_auc_curve	Source code
..process_data_for_regression_metrics	Source code
..randomise_hyperparameter_set	Source code
..regression_vimp_assess_feature	Source code
..replace_broken_function	Source code
..required_plotting_packages	Source code
..restrict_ice_samples	Source code
..select_ice_plot_data	Source code
..set_edge_points	Source code
..set_identifier_column	Source code
..survival_probability_relative_risk	Source code
..trim_functions	Source code
..trim_glmnet	Source code
..univariate_test_variable_encoding	Source code
..update_hyperparameter_optimisation_stopping_criteria	Source code
..update_ice_and_pd_output	Source code
..warning_missing_cohorts	Source code
..warning_no_comparison_between_models	Source code
..warning_package_not_installed	Source code
.activate_socket_server_routine	Source code
.add_batch_normalisation_parameters	Source code
.add_cluster_info	Source code
.add_data_dummy_columns	Source code
.add_imputation_info	Source code
.add_iteration_to_run	Source code
.add_normalisation_parameters	Source code
.add_package_version	Source code
.add_plot_cluster_name	Source code
.add_time_to_plot_subtitle	Source code
.add_transformation_parameters	Source code
.aggregate_outcome_info	Source code
.any_randomised_hyperparameters	Source code
.append_feature_similarity_clustering	Source code
.append_feature_similarity_clusters	Source code
.append_feature_similarity_dendrogram	Source code
.append_sample_similarity_dendrogram	Source code
.apply_recalibration	Source code
.apply_risk_threshold	Source code
.arrange_plot_grobs	Source code
.as_preprocessing_level	Source code
.as_vimp_table_state	Source code
.assign_backend_options_to_global	Source code
.assign_data_to_backend	Source code
.assign_feature_info_to_backend	Source code
.assign_file_paths_to_global	Source code
.assign_outcome_info_to_global	Source code
.assign_parallel_options_to_global	Source code
.assign_project_info_to_global	Source code
.assign_risk_group_names	Source code
.assign_settings_to_global	Source code
.auto_stacker	Source code
.available_connections	Source code
.bioconductor_packages	Source code
.capture_show	Source code
.change_environment	Source code
.check_anchor_value	Source code
.check_argument_length	Source code
.check_class_level_plausibility	Man page Source code
.check_cluster_parameters	Source code
.check_cluster_type_availability	Source code
.check_configuration_tag_is_parameter	Source code
.check_dots_is_parameter	Source code
.check_experimental_design_section_table	Source code
.check_feature_availability	Man page Source code
.check_ggtheme	Source code
.check_hyperparameter_learner_available	Source code
.check_hyperparameters	Source code
.check_input_identifier_column	Man page Source code
.check_input_plot_args	Man page Source code
.check_input_plot_break	Source code
.check_input_plot_label	Source code
.check_input_plot_legend	Source code
.check_input_plot_n_breaks	Source code
.check_input_plot_range	Source code
.check_learner_outcome_type	Source code
.check_metric_outcome_type	Source code
.check_novelty_detector_available	Source code
.check_number_in_valid_range	Source code
.check_outcome_type_plausibility	Man page Source code
.check_package_version	Source code
.check_parameter_value_is_valid	Source code
.check_plot_grid_unit	Source code
.check_plot_splitting_variables	Man page Source code
.check_single_hyperparameter	Source code
.check_survival_time_plausibility	Man page Source code
.check_value_not_shared	Source code
.check_vimp_outcome_type	Source code
.chop_args	Source code
.chopped_apply	Source code
.clean_configuration_comments	Source code
.clean_familiar_environment	Source code
.cluster_representation_as_mean_feature	Source code
.cluster_representation_by_best_predictor	Source code
.cluster_representation_by_medioid	Source code
.cluster_representation_by_singular_features	Source code
.collect_and_aggregate_feature_info	Source code
.collect_collection_info	Source code
.collect_hyperparameter_optimisation_completed_objects	Source code
.combat_iterative_parametric_bayes_solver	Source code
.combat_non_parametric_bayes_solver	Source code
.combine_guide_grobs	Source code
.compare_hyperparameter_sets	Source code
.complete_experimental_design_section_table	Source code
.complete_expression_table	Source code
.complete_feature_similarity_table	Source code
.compute_adjusted_univariate_p_value	Source code
.compute_auc_data_categorical	Source code
.compute_calibration_data	Source code
.compute_calibration_data_categorical	Source code
.compute_calibration_data_density	Source code
.compute_calibration_data_regression	Source code
.compute_calibration_data_survival	Source code
.compute_calibration_hosmer_lemeshow	Source code
.compute_calibration_linear_fit	Source code
.compute_calibration_nam_dagostino	Source code
.compute_combat_batch_normalisation_z_matrix	Source code
.compute_concordance_index	Source code
.compute_dca_data_categorical	Source code
.compute_dca_data_categorical_model	Source code
.compute_dca_data_survival	Source code
.compute_dca_data_survival_model	Source code
.compute_effective_number_of_samples	Source code
.compute_expected_train_time	Source code
.compute_feature_distribution_data	Source code
.compute_feature_occurrence	Source code
.compute_feature_similarity_cluster_table	Source code
.compute_hyperparameter_additional_scores	Source code
.compute_hyperparameter_model_performance	Source code
.compute_hyperparameter_optimisation_score	Source code
.compute_hyperparameter_summary_score	Source code
.compute_hyperparameter_variable_importance	Source code
.compute_inverse_number_of_samples	Source code
.compute_metric_optimisation_score	Source code
.compute_model_performance	Source code
.compute_mutual_information	Source code
.compute_outcome_distribution_data	Source code
.compute_permutation_vimp	Source code
.compute_rank_best_rank	Source code
.compute_rank_borda	Source code
.compute_rank_exponential	Source code
.compute_rank_mean_rank	Source code
.compute_rank_mean_score	Source code
.compute_rank_median_rank	Source code
.compute_rank_stability	Source code
.compute_rank_worst_rank	Source code
.compute_risk_stratification_curves	Source code
.compute_risk_stratification_hazard_ratio_test	Source code
.compute_risk_stratification_logrank_test	Source code
.compute_risk_stratification_tests	Source code
.compute_sample_similarity_cluster_table	Source code
.compute_utility_value	Source code
.compute_z_statistic	Source code
.convert_cluster_table_to_cluster_objects	Source code
.convert_dendrogram_to_table	Source code
.convert_to_grob	Source code
.create_1d_ice_plot	Source code
.create_2d_ice_plot	Source code
.create_balanced_partitions	Source code
.create_batch_normalisation_parameter_skeleton	Source code
.create_bootstraps	Source code
.create_calibration_density_subplot	Source code
.create_calibration_plot	Source code
.create_cluster_parameter_skeleton	Source code
.create_clustering_table	Source code
.create_cv	Source code
.create_empty_plot_grob	Source code
.create_expression_dendrogram_plot	Source code
.create_expression_heatmap	Source code
.create_expression_outcome_plot	Source code
.create_familiar_collection_runtime	Source code
.create_familiar_data_runtime	Source code
.create_familiar_ensemble_runtime	Source code
.create_feature_range	Source code
.create_feature_rank_plot	Source code
.create_feature_similarity_cluster_method_object	Source code
.create_feature_similarity_dendrogram_plot	Source code
.create_feature_similarity_heatmap	Source code
.create_hyperparameter_challenger_sets	Source code
.create_hyperparameter_optimisation_directory	Source code
.create_hyperparameter_optimisation_initial_objects	Source code
.create_hyperparameter_time_optimisation_model	Source code
.create_ice_and_pd_objects	Source code
.create_ice_plot_novelty_range	Source code
.create_ice_plot_value_range	Source code
.create_imputation_parameter_skeleton	Source code
.create_iteration_run_list	Source code
.create_iterations	Source code
.create_km_subplot	Source code
.create_loocv	Source code
.create_normalisation_parameter_skeleton	Source code
.create_pd_object	Source code
.create_permutation_data_elements	Source code
.create_plot_guide_table	Source code
.create_plot_legend_title	Source code
.create_plot_subtitle	Source code
.create_plot_subtype	Source code
.create_repeated_cv	Source code
.create_sample_similarity_cluster_method_object	Source code
.create_similarity_metric_object	Source code
.create_subsample	Source code
.create_survival_table_subplot	Source code
.create_transformation_parameter_skeleton	Source code
.decompose_dendrogram	Source code
.determine_auc_roc_plot_dimensions	Source code
.determine_calibration_plot_dimensions	Source code
.determine_confusion_matrix_plot_dimensions	Source code
.determine_decision_curve_plot_dimensions	Source code
.determine_feature_ranking_plot_dimensions	Source code
.determine_feature_similarity_plot_dimensions	Source code
.determine_ice_plot_dimensions	Source code
.determine_km_plot_default_dimensions	Source code
.determine_model_performance_plot_dimensions	Source code
.determine_permutation_importance_plot_dimensions	Source code
.determine_preprocessing_parameters	Source code
.determine_sample_clustering_plot_dimensions	Source code
.dots_arg_length	Source code
.draw_plot	Source code
.duplicate_environment	Source code
.encode_categorical_hyperparameters	Source code
.exists_hyperparameter_optimisation_object	Source code
.experimental_design_is_file	Source code
.extract_calibration_data	Source code
.extract_calibration_info	Source code
.extract_confusion_matrix	Source code
.extract_decision_curve_data	Source code
.extract_dispatcher_ensemble	Source code
.extract_dispatcher_hybrid	Source code
.extract_dispatcher_model	Source code
.extract_feature_similarity	Source code
.extract_hyperparameters	Source code
.extract_ice	Source code
.extract_model_performance_data	Source code
.extract_model_vimp	Source code
.extract_permutation_vimp	Source code
.extract_plot_grobs	Source code
.extract_predictions	Source code
.extract_risk_stratification_data	Source code
.extract_risk_stratification_info	Source code
.extract_roc_curve_data	Source code
.extract_sample_similarity	Source code
.fam_apply	Source code
.fam_rnorm	Source code
.fam_runif	Source code
.familiar_version_string	Source code
.file_extension	Source code
.find_hyperparameters_for_run	Source code
.find_maxstat_threshold	Source code
.find_mean_threshold	Source code
.find_missing_feature_selection_data	Source code
.find_quantile_threshold	Source code
.find_survival_grouping_thresholds	Source code
.finish_data_preparation	Man page Source code
.flatten_nested_fam_apply	Source code
.flatten_nested_list	Source code
.format_plot_number	Source code
.format_plot_number_nice_range	Source code
.get_all_configuration_parent_node_names	Source code
.get_all_metrics	Source code
.get_all_parameter_names	Source code
.get_analysis_type_pairwise_similarity	Source code
.get_available_accuracy_metrics	Source code
.get_available_acquisition_functions	Source code
.get_available_auc_roc_metrics	Source code
.get_available_backend_types	Source code
.get_available_balanced_accuracy_metrics	Source code
.get_available_balanced_error_rate_metrics	Source code
.get_available_bart_hyperparameter_learners	Source code
.get_available_batch_normalisation_methods	Source code
.get_available_bootstrap_confidence_interval_methods	Source code
.get_available_box_cox_transformation_methods	Source code
.get_available_brier_metrics	Source code
.get_available_cluster_cut_methods	Source code
.get_available_cluster_methods	Source code
.get_available_cluster_representation_methods	Source code
.get_available_cohen_kappa_metrics	Source code
.get_available_combat_non_parametric_normalisation_methods	Source code
.get_available_combat_parametric_normalisation_methods	Source code
.get_available_concordance_index_harrell	Source code
.get_available_concordance_index_metrics	Source code
.get_available_concordance_vimp_method	Source code
.get_available_confusion_matrix_metrics	Source code
.get_available_corelearn_gain_ratio_vimp_method	Source code
.get_available_corelearn_gini_vimp_method	Source code
.get_available_corelearn_mdl_vimp_method	Source code
.get_available_corelearn_relieff_exp_rank_vimp_method	Source code
.get_available_correlation_vimp_methods	Source code
.get_available_cox_learners	Source code
.get_available_data_elements	Source code
.get_available_ensemble_prediction_methods	Source code
.get_available_explained_variance_metrics	Source code
.get_available_f1_score_metrics	Source code
.get_available_fdr_metrics	Source code
.get_available_glm_learners	Source code
.get_available_glmnet_elastic_net_learners	Source code
.get_available_glmnet_elastic_net_vimp_methods	Source code
.get_available_glmnet_lasso_learners	Source code
.get_available_glmnet_lasso_learners_test_all_fail	Source code
.get_available_glmnet_lasso_learners_test_extreme	Source code
.get_available_glmnet_lasso_learners_test_some_fail	Source code
.get_available_glmnet_lasso_vimp_methods	Source code
.get_available_glmnet_ridge_learners	Source code
.get_available_glmnet_ridge_vimp_methods	Source code
.get_available_hyperparameter_exploration_methods	Source code
.get_available_hyperparameter_learners	Source code
.get_available_icc_types	Source code
.get_available_imputation_methods	Source code
.get_available_informedness_metrics	Source code
.get_available_isolation_forest_detectors	Source code
.get_available_knn_learners	Source code
.get_available_lagp_hyperparameter_learners	Source code
.get_available_lasso_imputation_methods	Source code
.get_available_linkage_methods	Source code
.get_available_mae_metrics	Source code
.get_available_markedness_metrics	Source code
.get_available_mboost_lm_learners	Source code
.get_available_mboost_tree_learners	Source code
.get_available_mcc_metrics	Source code
.get_available_mean_centering_normalisation_methods	Source code
.get_available_medea_metrics	Source code
.get_available_mlae_metrics	Source code
.get_available_mse_metrics	Source code
.get_available_msle_metrics	Source code
.get_available_multivariate_mutual_information_vimp_method	Source code
.get_available_multivariate_regression_vimp_methods	Source code
.get_available_naive_bayes_learners	Source code
.get_available_no_features_vimp_methods	Source code
.get_available_none_detectors	Source code
.get_available_none_normalisation_methods	Source code
.get_available_none_transformation_methods	Source code
.get_available_none_vimp_methods	Source code
.get_available_normalisation_methods	Source code
.get_available_normalisation_normalisation_methods	Source code
.get_available_novelty_prediction_type_arguments	Source code
.get_available_npv_metrics	Source code
.get_available_optimisation_functions	Source code
.get_available_ppv_metrics	Source code
.get_available_prediction_type_arguments	Source code
.get_available_quantile_normalisation_methods	Source code
.get_available_r_squared_metrics	Source code
.get_available_rae_metrics	Source code
.get_available_random_search_hyperparameter_learners	Source code
.get_available_random_vimp_methods	Source code
.get_available_ranger_default_learners	Source code
.get_available_ranger_default_vimp_methods	Source code
.get_available_ranger_hyperparameter_learners	Source code
.get_available_ranger_learners	Source code
.get_available_ranger_vimp_methods	Source code
.get_available_rank_aggregation_methods	Source code
.get_available_regression_metrics	Source code
.get_available_rfsrc_default_learners	Source code
.get_available_rfsrc_default_vimp_methods	Source code
.get_available_rfsrc_learners	Source code
.get_available_rfsrc_vimp_methods	Source code
.get_available_risklike_prediction_types	Source code
.get_available_rmse_metrics	Source code
.get_available_rmsle_metrics	Source code
.get_available_rrse_metrics	Source code
.get_available_rse_metrics	Source code
.get_available_sensitivity_metrics	Source code
.get_available_signature_only_vimp_methods	Source code
.get_available_similarity_metrics	Source code
.get_available_simple_imputation_methods	Source code
.get_available_specificity_metrics	Source code
.get_available_standardisation_normalisation_methods	Source code
.get_available_stratification_ensemble_methods	Source code
.get_available_stratification_methods	Source code
.get_available_subsample_methods	Source code
.get_available_survival_regression_learners	Source code
.get_available_svm_c_learners	Source code
.get_available_svm_eps_learners	Source code
.get_available_svm_nu_learners	Source code
.get_available_transformation_methods	Source code
.get_available_univariate_mutual_information_vimp_method	Source code
.get_available_univariate_regression_vimp_methods	Source code
.get_available_xgboost_dart_learners	Source code
.get_available_xgboost_lm_learners	Source code
.get_available_xgboost_tree_learners	Source code
.get_available_yeo_johnson_transformation_methods	Source code
.get_available_youden_metrics	Source code
.get_backend_server_port	Source code
.get_class_methods	Source code
.get_cluster_data_type_element_name	Source code
.get_data_from_backend	Source code
.get_default_metric	Source code
.get_default_normalisation_range_for_plotting	Source code
.get_default_palette	Source code
.get_default_sample_weighting_beta	Source code
.get_default_sample_weighting_method	Source code
.get_default_sign_size	Man page Source code
.get_desired_n_cores	Source code
.get_detector_hyperparameters	Source code
.get_ensemble_structure_info	Source code
.get_experimental_design_section_table	Source code
.get_feature_columns	Source code
.get_feature_info_data	Source code
.get_feature_info_file_name	Source code
.get_feature_info_from_backend	Source code
.get_feature_info_list	Source code
.get_feature_info_list_name	Source code
.get_feature_selection_data_filename	Source code
.get_generic_feature_info	Source code
.get_hyperparameter_optimisation_object_path	Source code
.get_iteration_data	Man page Source code
.get_iteration_file_name	Source code
.get_iteration_identifiers	Source code
.get_learner_hyperparameters	Source code
.get_log_file	Source code
.get_metric_default_range	Source code
.get_n_samples	Source code
.get_non_feature_columns	Source code
.get_outcome_class_levels	Source code
.get_outcome_columns	Source code
.get_outcome_info	Source code
.get_palette	Source code
.get_plot_geom_text_settings	Source code
.get_plot_layout_dims	Source code
.get_plot_layout_table	Source code
.get_plot_legend_spacing	Source code
.get_plot_panel_spacing	Source code
.get_plot_results	Source code
.get_preprocessing_iteration_identifiers	Source code
.get_preset_hyperparameters	Source code
.get_process_step_data_identifier	Source code
.get_required_features	Source code
.get_risk_group_sizes	Source code
.get_run_list	Source code
.get_sample_identifiers	Source code
.get_selected_backend_type	Source code
.get_selected_cluster_type	Source code
.get_socket_server_process_handle	Source code
.get_vimp_hyperparameters	Source code
.gtable_drop_empty	Source code
.gtable_element_in_layout	Source code
.gtable_extract	Source code
.gtable_filter_exact	Source code
.gtable_get_extent	Source code
.gtable_get_position	Source code
.gtable_insert	Source code
.gtable_insert_along	Source code
.gtable_rename_element	Source code
.gtable_update_layout	Source code
.gtable_which_aligned	Source code
.has_optimised_hyperparameters	Source code
.import_all_familiar_objects	Source code
.impute_features	Source code
.impute_outcome_type	Man page Source code
.impute_survival_indicators	Source code
.is_absolute_path	Source code
.is_colour	Source code
.is_external_cluster	Source code
.is_socket_server_process_started	Source code
.is_survival_status_col	Source code
.is_survival_time_col	Source code
.is_testing	Source code
.load_configuration_file	Source code
.load_csv	Source code
.load_data	Source code
.load_iterations	Man page Source code
.load_rdata	Source code
.load_rds	Source code
.mask_data_to_mask	Source code
.needs_cluster_restart	Source code
.normalise	Source code
.normalise_expression_data	Source code
.optimisation_process_time_available	Source code
.optimise_cluster_silhouette	Source code
.optimise_feature_occurrence_threshold	Source code
.palette_to_colour	Source code
.parse_aggregate_results	Source code
.parse_arg	Source code
.parse_categorical_features	Man page Source code
.parse_detail_level	Source code
.parse_estimation_type	Source code
.parse_evaluation_settings	Man page Source code
.parse_experiment_settings	Man page Source code
.parse_feature_selection_settings	Man page Source code
.parse_file_paths	Man page Source code
.parse_general_settings	Man page Source code
.parse_hyperparameter_optimisation_settings	Man page Source code
.parse_hyperparameters	Source code
.parse_initial_settings	Man page Source code
.parse_integer_features	Man page Source code
.parse_model_development_settings	Man page Source code
.parse_plot_facet_by	Source code
.parse_preprocessing_settings	Man page Source code
.parse_sample_limit	Source code
.parse_setup_settings	Man page Source code
.perform_type_conversion	Source code
.plot_auc_curve	Source code
.plot_calibration_plot	Source code
.plot_confusion_matrix_plot	Source code
.plot_decision_curve_plot	Source code
.plot_feature_similarity_plot	Source code
.plot_ice	Source code
.plot_kaplan_meier	Source code
.plot_model_performance_plot	Source code
.plot_permutation_variable_importance	Man page Source code
.plot_sample_clustering_plot	Source code
.plot_univariate_importance	Man page
.plot_variable_importance	Source code
.predictions_valid	Source code
.prepare_familiar_collections	Source code
.prepare_familiar_data_sets	Man page Source code
.prepare_km_conf_int_plot_data	Source code
.preprocess_data	Source code
.process_collections	Source code
.process_expression_generic_outcome	Source code
.process_expression_survival_outcome	Source code
.process_input_data	Source code
.reinsert_plot_grobs	Source code
.remove	Source code
.remove_plot_grobs	Source code
.rename_plot_grobs	Source code
.replace_broken_functions	Source code
.replace_environment	Source code
.replace_illegal_column_name	Source code
.report_ensemble_models	Source code
.report_experimental_design	Source code
.report_missing_package_messages	Source code
.require_package	Source code
.required_packages_backend	Source code
.restart_cluster	Source code
.retrieve_feature_selection_data	Source code
.run_preprocessing	Source code
.sanitise_dots	Source code
.save	Source code
.save_iterations	Source code
.save_plot_to_file	Source code
.select_feature_clusters	Source code
.select_ice_plot_data	Source code
.set_hyperparameter	Source code
.set_recalibration	Source code
.set_signature_size	Source code
.show_simple_feature_info	Source code
.shutdown_active_socket_server_routine	Source code
.split_data_by_plot_facet	Source code
.start_cluster	Source code
.start_random_number_stream	Source code
.sub_last	Source code
.summarise_metric_optimisation_score	Source code
.survival_probability_relative_risk	Source code
.terminate_cluster	Source code
.test_create_hyperparameter_object	Source code
.test_start_cluster	Source code
.test_which_data_element_present	Source code
.test_which_plot_present	Source code
.univariate_binomial_logistic_regression_test	Source code
.univariate_cox_regression_test	Source code
.univariate_linear_regression_test	Source code
.univariate_multinomial_logistic_regression_test	Source code
.univariate_poisson_regression_test	Source code
.update_axis_text_grobs	Source code
.update_cluster	Source code
.update_experimental_design_settings	Man page Source code
.update_hyperparameters	Source code
.update_ice_and_pd_output	Source code
.update_info_on_cluster	Source code
.update_initial_settings	Man page Source code
.update_plot_layout_table	Source code
.why_bad_training_data	Source code
.wrapper_fun	Source code
.wrapper_fun_progress	Source code
.wrapper_fun_time	Source code
.wrapper_fun_time_progress	Source code
acquisition_bayes_upper_confidence_bound	Source code
acquisition_expected_improvement	Source code
acquisition_improvement_empirical_probability	Source code
acquisition_improvement_probability	Source code
acquisition_upper_confidence_bound	Source code
add_batch_normalisation_parameters	Source code
add_cluster_info	Source code
add_control_info	Source code
add_imputation_info	Source code
add_missing_value_fractions	Source code
add_model_data_to_run_list	Source code
add_normalisation_parameters	Source code
add_novelty_info	Source code
add_required_features	Source code
add_signature_info	Source code
add_transformation_parameters	Source code
aggregate_vimp_table	Man page
aggregate_vimp_table,NULL-method	Man page
aggregate_vimp_table,character-method	Man page
aggregate_vimp_table,experimentData-method	Man page
aggregate_vimp_table,list-method	Man page
aggregate_vimp_table,vimpTable-method	Man page
all_empty_slot	Source code
all_predictions_valid	Source code
any_predictions_valid	Source code
approximately	Source code
as_data_object	Man page
as_data_object,ANY-method	Man page
as_data_object,data.table-method	Man page
as_data_object,dataObject-method	Man page
as_familiar_collection	Man page
as_familiar_collection,ANY-method	Man page
as_familiar_collection,character-method	Man page
as_familiar_collection,familiarCollection-method	Man page
as_familiar_collection,familiarData-method	Man page
as_familiar_collection,familiarEnsemble-method	Man page
as_familiar_collection,familiarModel-method	Man page
as_familiar_collection,list-method	Man page
as_familiar_data	Man page
as_familiar_data,ANY-method	Man page
as_familiar_data,character-method	Man page
as_familiar_data,familiarData-method	Man page
as_familiar_data,familiarEnsemble-method	Man page
as_familiar_data,familiarModel-method	Man page
as_familiar_data,list-method	Man page
as_familiar_ensemble	Man page
as_familiar_ensemble,ANY-method	Man page
as_familiar_ensemble,character-method	Man page
as_familiar_ensemble,familiarEnsemble-method	Man page
as_familiar_ensemble,familiarModel-method	Man page
as_familiar_ensemble,list-method	Man page
as_metric	Source code
as_vimp_table_object	Source code
build_model	Source code
coef	Man page
coef,familiarModel-method	Man page
combine_feature_info_list	Source code
compute_feature_distribution_data	Source code
compute_feature_similarity_metric	Source code
compute_icc	Source code
compute_sample_similarity_metric	Source code
compute_univariable_p_values	Source code
compute_variable_importance	Source code
condition_parser	Source code
condition_summary	Source code
convert_distance_to_similarity	Source code
convert_similarity_to_distance	Source code
create_batch_normalisation_parameter_skeleton	Source code
create_cluster_method_object	Source code
create_cluster_parameter_skeleton	Source code
create_data_column_info	Source code
create_experiment_data	Source code
create_feature_info	Source code
create_imputation_parameter_skeleton	Source code
create_normalisation_parameter_skeleton	Source code
create_outcome_info	Source code
create_outcome_info_from_data	Source code
create_randomised_groups	Man page Source code
create_transformation_parameter_skeleton	Source code
dataObject-class	Man page
debug_test_that	Source code
determine_preprocessing_parameters	Source code
dmapply	Source code
do.call_strict	Source code
do.call_with_handlers	Source code
do.call_with_handlers_timeout	Source code
do.call_with_timeout	Source code
encapsulate_path	Man page Source code
endswith_any	Source code
experimentData-class	Man page
export_all	Man page
export_all,ANY-method	Man page
export_all,familiarCollection-method	Man page
export_auc_data	Man page
export_auc_data,ANY-method	Man page
export_auc_data,familiarCollection-method	Man page
export_calibration_data	Man page
export_calibration_data,ANY-method	Man page
export_calibration_data,familiarCollection-method	Man page
export_calibration_info	Man page
export_calibration_info,ANY-method	Man page
export_calibration_info,familiarCollection-method	Man page
export_confusion_matrix_data	Man page
export_confusion_matrix_data,ANY-method	Man page
export_confusion_matrix_data,familiarCollection-method	Man page
export_decision_curve_analysis_data	Man page
export_decision_curve_analysis_data,ANY-method	Man page
export_decision_curve_analysis_data,familiarCollection-method	Man page
export_feature_expressions	Man page
export_feature_expressions,ANY-method	Man page
export_feature_expressions,familiarCollection-method	Man page
export_feature_similarity	Man page
export_feature_similarity,ANY-method	Man page
export_feature_similarity,familiarCollection-method	Man page
export_fs_vimp	Man page
export_fs_vimp,ANY-method	Man page
export_fs_vimp,familiarCollection-method	Man page
export_hyperparameters	Man page
export_hyperparameters,ANY-method	Man page
export_hyperparameters,familiarCollection-method	Man page
export_ice_data	Man page
export_ice_data,ANY-method	Man page
export_ice_data,familiarCollection-method	Man page
export_model_performance	Man page
export_model_performance,ANY-method	Man page
export_model_performance,familiarCollection-method	Man page
export_model_vimp	Man page
export_model_vimp,ANY-method	Man page
export_model_vimp,familiarCollection-method	Man page
export_partial_dependence_data	Man page
export_partial_dependence_data,ANY-method	Man page
export_partial_dependence_data,familiarCollection-method	Man page
export_permutation_vimp	Man page
export_permutation_vimp,ANY-method	Man page
export_permutation_vimp,familiarCollection-method	Man page
export_prediction_data	Man page
export_prediction_data,ANY-method	Man page
export_prediction_data,familiarCollection-method	Man page
export_risk_stratification_data	Man page
export_risk_stratification_data,ANY-method	Man page
export_risk_stratification_data,familiarCollection-method	Man page
export_risk_stratification_info	Man page
export_risk_stratification_info,ANY-method	Man page
export_risk_stratification_info,familiarCollection-method	Man page
export_sample_similarity	Man page
export_sample_similarity,ANY-method	Man page
export_sample_similarity,familiarCollection-method	Man page
export_univariate_analysis_data	Man page
export_univariate_analysis_data,ANY-method	Man page
export_univariate_analysis_data,familiarCollection-method	Man page
extract_auc_data	Man page
extract_calibration_data	Man page
extract_calibration_info	Man page
extract_confusion_matrix	Man page
extract_data	Man page
extract_decision_curve_data	Man page
extract_dispatcher,familiarEnsemble,familiarDataElement-method	Man page
extract_experimental_setup	Man page Source code
extract_feature_expression	Man page
extract_feature_similarity	Man page
extract_from_slot	Source code
extract_fs_vimp	Man page
extract_hyperparameters	Man page
extract_ice	Man page
extract_model_vimp	Man page
extract_performance	Man page
extract_permutation_vimp	Man page
extract_predictions	Man page
extract_risk_stratification_data	Man page
extract_risk_stratification_info	Man page
extract_sample_similarity	Man page
extract_univariate_analysis	Man page
fam_lapply	Source code
fam_lapply_lb	Source code
fam_mapply	Source code
fam_mapply_lb	Source code
fam_rnorm	Source code
fam_runif	Source code
fam_sapply	Source code
fam_sapply_lb	Source code
familiar	Man page
familiar-package	Man page
familiarCollection-class	Man page
familiarData-class	Man page
familiarDataElement-class	Man page
familiarEnsemble-class	Man page
familiarHyperparameterLearner-class	Man page
familiarMetric-class	Man page
familiarModel-class	Man page
familiarNoveltyDetector-class	Man page
familiarVimpMethod-class	Man page
featureInfo-class	Man page
featureInfoParameters-class	Man page
features_after_clustering	Source code
features_before_clustering	Source code
find_invariant_features	Source code
find_low_variance_features	Source code
find_non_robust_features	Source code
find_novelty_features	Source code
find_unimportant_features	Source code
fivenum_summary	Source code
get_available_features	Source code
get_baseline_survival	Source code
get_best_hyperparameter_set	Source code
get_class_names	Man page
get_class_names,familiarCollection-method	Man page
get_data_from_backend	Source code
get_data_set_names	Man page
get_data_set_names,familiarCollection-method	Man page
get_estimate	Source code
get_feature_info_from_backend	Source code
get_feature_names	Man page
get_feature_names,familiarCollection-method	Man page
get_file_paths	Source code
get_fs_learner_combinations	Source code
get_fs_method_names	Man page
get_fs_method_names,familiarCollection-method	Man page
get_high_similarity_threshold	Source code
get_id_columns	Source code
get_learner_names	Man page
get_learner_names,familiarCollection-method	Man page
get_mean_risk_group	Source code
get_mode	Source code
get_object_dir_path	Source code
get_object_file_name	Source code
get_os	Source code
get_outcome_info_from_backend	Source code
get_placeholder_run_table	Source code
get_placeholder_vimp_table	Source code
get_project_list	Source code
get_risk_group_names	Man page
get_risk_group_names,familiarCollection-method	Man page
get_settings	Source code
get_similarity_range	Source code
get_vimp_table	Man page
get_vimp_table,NULL-method	Man page
get_vimp_table,character-method	Man page
get_vimp_table,experimentData-method	Man page
get_vimp_table,familiarModel-method	Man page
get_vimp_table,list-method	Man page
get_vimp_table,vimpTable-method	Man page
get_xml_config	Man page Source code
gsub_all_patterns	Source code
harmonic_p_value	Source code
huber_estimate	Source code
integrated_test	Source code
is.encapsulated_path	Man page Source code
is.waive	Man page Source code
is_any	Source code
is_default_distance	Source code
is_package_installed	Source code
is_package_newer	Source code
is_package_outdated	Source code
is_singular_data	Source code
is_subclass	Source code
is_valid_data	Source code
load_experiment_data	Source code
logger_message	Source code
logger_stop	Source code
logger_warning	Source code
near	Source code
outcomeInfo-class	Man page
paste_c	Source code
paste_s	Source code
plot_auc_precision_recall_curve	Man page
plot_auc_precision_recall_curve,ANY-method	Man page
plot_auc_precision_recall_curve,familiarCollection-method	Man page
plot_auc_roc_curve	Man page
plot_auc_roc_curve,ANY-method	Man page
plot_auc_roc_curve,familiarCollection-method	Man page
plot_calibration_data	Man page
plot_calibration_data,ANY-method	Man page
plot_calibration_data,familiarCollection-method	Man page
plot_confusion_matrix	Man page
plot_confusion_matrix,ANY-method	Man page
plot_confusion_matrix,familiarCollection-method	Man page
plot_decision_curve	Man page
plot_decision_curve,ANY-method	Man page
plot_decision_curve,familiarCollection-method	Man page
plot_feature_selection_occurrence	Man page Source code
plot_feature_selection_variable_importance	Man page Source code
plot_feature_similarity	Man page
plot_feature_similarity,ANY-method	Man page
plot_feature_similarity,familiarCollection-method	Man page
plot_ice	Man page
plot_ice,ANY-method	Man page
plot_ice,familiarCollection-method	Man page
plot_kaplan_meier	Man page
plot_kaplan_meier,ANY-method	Man page
plot_kaplan_meier,familiarCollection-method	Man page
plot_model_performance	Man page
plot_model_performance,ANY-method	Man page
plot_model_performance,familiarCollection-method	Man page
plot_model_signature_occurrence	Man page Source code
plot_model_signature_variable_importance	Man page Source code
plot_pd	Man page
plot_pd,ANY-method	Man page
plot_permutation_variable_importance	Man page
plot_permutation_variable_importance,ANY-method	Man page
plot_permutation_variable_importance,familiarCollection-method	Man page
plot_sample_clustering	Man page
plot_sample_clustering,ANY-method	Man page
plot_sample_clustering,familiarCollection-method	Man page
plot_univariate_importance	Man page
plot_univariate_importance,ANY-method	Man page
plot_univariate_importance,familiarCollection-method	Man page
plot_variable_importance	Man page
plot_variable_importance,ANY-method	Man page
plot_variable_importance,familiarCollection-method	Man page
precompute_data_assignment	Man page Source code
precompute_feature_info	Man page Source code
precompute_vimp	Man page Source code
predict	Man page
predict,character-method	Man page
predict,familiarEnsemble-method	Man page
predict,familiarModel-method	Man page
predict,familiarNoveltyDetector-method	Man page
predict,list-method	Man page
prepare_vimp_table_object	Source code
process_random_forest_survival_predictions	Source code
quiet	Source code
remove_nonvalid_predictions	Source code
rstring	Source code
run_evaluation	Source code
run_feature_selection	Source code
run_hyperparameter_optimisation	Source code
run_model_development	Source code
run_preprocessing	Source code
set_class_names	Man page
set_class_names,familiarCollection-method	Man page
set_clustered_data	Source code
set_data_set_names	Man page
set_data_set_names,familiarCollection-method	Man page
set_feature_names	Man page
set_feature_names,familiarCollection-method	Man page
set_fs_method_names	Man page
set_fs_method_names,familiarCollection-method	Man page
set_learner_names	Man page
set_learner_names,familiarCollection-method	Man page
set_object_name,familiarData-method	Man page
set_object_name,familiarEnsemble-method	Man page
set_object_name,familiarModel-method	Man page
set_risk_group_names	Man page
set_risk_group_names,familiarCollection-method	Man page
shutdown_backend_server	Source code
socket_client_close_connection	Source code
socket_client_do_call	Source code
socket_client_handshake	Source code
socket_client_open_connection	Source code
socket_client_server_shutdown	Source code
socket_server	Source code
socket_server_execution_loop	Source code
socket_server_handshake	Source code
start_socket_server_process	Source code
startswith_any	Source code
stop_or_warn	Source code
strsplit_all	Source code
sub_all_patterns	Source code
sub_last	Source code
summary	Man page
summary,familiarModel-method	Man page
summon_familiar	Man page Source code
suppress_warnings	Source code
test_all_learners_available	Source code
test_all_learners_parallel_train_predict_vimp	Source code
test_all_learners_train_predict_vimp	Source code
test_all_metrics	Source code
test_all_metrics_available	Source code
test_all_novelty_detectors	Source code
test_all_novelty_detectors_available	Source code
test_all_novelty_detectors_parallel	Source code
test_all_vimp_methods	Source code
test_all_vimp_methods_available	Source code
test_all_vimp_methods_parallel	Source code
test_create_all_identical_data	Source code
test_create_bad_data	Source code
test_create_bootstrapped_data	Source code
test_create_data_without_feature	Source code
test_create_empty_data	Source code
test_create_good_data	Source code
test_create_good_data_few_censored	Source code
test_create_good_data_one_censored	Source code
test_create_good_data_random_missing	Source code
test_create_good_data_without_censoring	Source code
test_create_invariant_good_data	Source code
test_create_mostly_prospective_data	Source code
test_create_multiple_synthetic_series	Source code
test_create_one_sample_data	Source code
test_create_partially_prospective_data	Source code
test_create_prospective_data	Source code
test_create_single_feature_data	Source code
test_create_single_feature_invariant_data	Source code
test_create_single_feature_one_sample_data	Source code
test_create_single_feature_two_values_data	Source code
test_create_small_bad_data	Source code
test_create_small_good_data	Source code
test_create_synthetic_correlated_bad_outcome_data	Source code
test_create_synthetic_correlated_data	Source code
test_create_synthetic_correlated_one_feature_invariant_data	Source code
test_create_synthetic_correlated_one_outcome_data	Source code
test_create_synthetic_correlated_one_sample_data	Source code
test_create_synthetic_series_data	Source code
test_create_synthetic_series_invariant_feature_data	Source code
test_create_synthetic_series_na_data	Source code
test_create_synthetic_series_one_feature_all_na_data	Source code
test_create_synthetic_series_one_feature_invariant_data	Source code
test_create_synthetic_series_one_outcome	Source code
test_create_synthetic_series_one_sample_data	Source code
test_create_synthetic_series_random_na_data	Source code
test_create_wide_data	Source code
test_data_drop_rare_feature_levels	Source code
test_data_package_installed	Source code
test_export	Source code
test_export_specific	Source code
test_hyperparameter_optimisation	Source code
test_not_deprecated	Source code
test_object_package_installed	Source code
test_plot_ordering	Source code
test_plots	Source code
theme_familiar	Man page Source code
train_familiar	Man page Source code
trim	Source code
trim_unused_features_from_list	Source code
unique_na	Source code
update_data_set	Source code
update_model_dir_path	Man page
update_model_dir_path,ANY-method	Man page
update_model_dir_path,familiarEnsemble-method	Man page
update_object	Man page
update_object,ANY-method	Man page
update_object,experimentData-method	Man page
update_object,familiarCollection-method	Man page
update_object,familiarData-method	Man page
update_object,familiarEnsemble-method	Man page
update_object,familiarModel-method	Man page
update_object,familiarNoveltyDetector-method	Man page
update_object,featureInfo-method	Man page
update_object,featureInfoParametersTransformationPowerTransform-	Man page
update_object,list-method	Man page
update_object,vimpTable-method	Man page
vcov	Man page
vcov,familiarModel-method	Man page
vimpTable-class	Man page
waiver	Man page Source code
winsor	Source code