API for califano-lab/PISCES
Protein Activity Inferecne in Single Cells

Global functions
ARACNeTable	Man page Source code
AddDist	Man page Source code
AddGES	Man page Source code
AddMDS	Man page Source code
AddNetworks	Man page Source code
AddPCA	Man page Source code
AddPISCESAssay	Man page Source code
AddUMAP	Man page Source code
LouvainClust	Man page Source code
MWKMeans	Man page Source code
MWUMrs	Man page Source code
MinAssignments	Man page Source code
MinClusters	Man page Source code
NormalizeExpression	Man page Source code
ObjectiveValue	Man page Source code
PAMClust	Man page Source code
PISCESActivity	Man page Source code
PISCESViper	Man page Source code
RegProcess	Man page Source code
TwoMatVipSim	Man page Source code
ViperMerge	Man page Source code
WeightedVIPER	Man page Source code
WriteMetaCells	Man page Source code
cluster_mr_heatmap	Man page Source code
cluster_mr_volcano	Man page Source code
cluster_pair_mr_volcano	Man page Source code
cluster_signature_mrs	Man page Source code
cohen_kappa	Man page Source code
color_levels	Man page Source code
combine_nes	Man page Source code
convert_genes	Man page Source code
cor_dist	Man page Source code
cpm_norm	Man page Source code
directed_nes	Man page Source code
ecdf_ges	Man page Source code
ecdf_norm	Man page Source code
fast_pca	Man page Source code
get_mr_set	Man page Source code
group_colors	Man page Source code
human_regulators	Man page
internal_ges	Man page Source code
kappa_cluster_mrs	Man page Source code
knn	Man page Source code
kw_cluster_mrs	Man page Source code
log_kw	Man page Source code
louvain_clust	Man page Source code
louvain_k	Man page Source code
make_mds	Man page Source code
make_metacells	Man page Source code
make_umap	Man page Source code
matrix_convert_genes	Man page Source code
matrix_narnea	Man page Source code
meta_narnea	Man page Source code
mouse_regulators	Man page
mt_genes	Man page
narnea_combine	Man page Source code
nes_covariance	Man page Source code
network_integrate	Source code
network_match_narnea	Man page Source code
opt_kappa	Man page Source code
pairwise_cluster_mrs	Man page Source code
pam_k	Man page Source code
pbmc.raw	Man page
pf_norm	Man page Source code
pflpf_norm	Man page Source code
qc_filt	Man page Source code
qc_plot	Man page Source code
quantile_breaks	Man page Source code
read10X	Man page Source code
scale_ges	Man page Source code
sig_features	Man page Source code
stouffer_cluster_mrs	Man page Source code
stouffer_narnea	Man page Source code
undirected_nes	Man page Source code
unweighted_integration	Man page Source code
weighted_integration	Man page Source code