Files in califano-lab/PISCES

Protein Activity Inferecne in Single Cells

R/aracne_funcs.R R/cluster_funcs.R R/gexp-transform_funcs.R R/human-regulators-data.R R/mouse-regulators-data.R R/mr_funcs.R R/mt-genes-data.R R/mwkmeans_funcs.R R/narnea_funcs.R R/object_funcs.R R/pbmc-raw-data.R R/plotting_funcs.R R/reduction_funcs.R R/util_funcs.R R/viper_funcs.R README.md man/ARACNeTable.Rd man/AddDist.Rd man/AddGES.Rd man/AddMDS.Rd man/AddNetworks.Rd man/AddPCA.Rd man/AddPISCESAssay.Rd man/AddUMAP.Rd man/KNN.Rd man/LouvainClust.Rd man/MWKMeans.Rd man/MWUMrs.Rd man/MinAssignments.Rd man/MinClusters.Rd man/NormalizeExpression.Rd man/ObjectiveValue.Rd man/PAMClust.Rd man/PISCESActivity.Rd man/PISCESViper.Rd man/RegProcess.Rd man/TwoMatVipSim.Rd man/ViperMerge.Rd man/WeightedVIPER.Rd man/WriteMetaCells.Rd man/cluster_mr_heatmap.Rd man/cluster_mr_volcano.Rd man/cluster_pair_mr_volcano.Rd man/cluster_signature_mrs.Rd man/cohen_kappa.Rd man/color_levels.Rd man/combine_nes.Rd man/convert_genes.Rd man/cor_dist.Rd man/cpm_norm.Rd man/directed_nes.Rd man/ecdf_ges.Rd man/ecdf_norm.Rd man/fast_pca.Rd man/get_mr_set.Rd man/group_colors.Rd man/human_regulators.Rd man/internal_ges.Rd man/kappa_cluster_mrs.Rd man/kw_cluster_mrs.Rd man/log_kw.Rd man/louvain_clust.Rd man/louvain_k.Rd man/make_mds.Rd man/make_metacells.Rd man/make_umap.Rd man/matrix_convert_genes.Rd man/matrix_narnea.Rd man/meta_narnea.Rd man/mouse_regulators.Rd man/mt_genes.Rd man/narnea_combine.Rd man/nes_covariance.Rd man/network_match_narnea.Rd man/opt_kappa.Rd man/pairwise_cluster_mrs.Rd man/pam_k.Rd man/pbmc.raw.Rd man/pf_norm.Rd man/pflpf_norm.Rd man/qc_filt.Rd man/qc_plot.Rd man/quantile_breaks.Rd man/read10X.Rd man/scale_ges.Rd man/sig_features.Rd man/stouffer_cluster_mrs.Rd man/stouffer_narnea.Rd man/undirected_nes.Rd man/unweighted_integration.Rd man/weighted_integration.Rd vignettes/general-workflow.Rmd vignettes/pisces_pbmc.Rmd