Global functions | |
---|---|
%iff% | Man page |
%||% | Man page |
.Abbrv | Source code |
.AddMetaData | Source code |
.AsList | Source code |
.BoundariesByImage | Source code |
.CalcN.IterableMatrix | Source code |
.Cut | Source code |
.FeatureRank | Source code |
.FeatureVar | Source code |
.FindE | Source code |
.Mean | Source code |
.MolsByFOV | Source code |
.ReadVitessceClusters | Source code |
.ReadVitessceGenes | Source code |
.SparseFeatureVar | Source code |
.SparseMean | Source code |
.SparseNormalize | Source code |
.VST | Source code |
.onAttach | Source code |
.onLoad | Source code |
.rd_methods | Source code |
AUCMarkerTest | Source code |
AddAzimuthResults | Man page Source code |
AddAzimuthScores | Man page Source code |
AddDatasetID | Source code |
AddMetaData | Man page |
AddModuleScore | Man page Source code |
AdjustSampleTree | Source code |
AggregateExpression | Man page Source code |
AnchorSet | Man page |
AnchorSet-class | Man page |
AnnotateAnchors | Man page Source code |
AnnotateAnchors.IntegrationAnchorSet | Man page Source code |
AnnotateAnchors.TransferAnchorSet | Man page Source code |
AnnotateAnchors.default | Man page Source code |
AnnoyBuildIndex | Source code |
AnnoyNN | Source code |
AnnoySearch | Source code |
Assay-class | Man page |
Assays | Man page |
AttachDeps | Source code |
AugmentPlot | Man page Source code |
AutoPointSize | Man page Source code |
AverageExpression | Man page Source code |
BGTextColor | Man page Source code |
Bandwidth | Source code |
BarcodeInflectionsPlot | Man page Source code |
BinData | Source code |
BlackAndWhite | Man page Source code |
BlendExpression | Source code |
BlendMap | Source code |
BlendMatrix | Source code |
BlueAndRed | Man page Source code |
BoldTitle | Man page Source code |
BridgeCellsRepresentation | Man page Source code |
BridgeReferenceSet | Man page |
BridgeReferenceSet-class | Man page |
BuildClusterTree | Man page Source code |
BuildNicheAssay | Man page Source code |
BuildSampleTree | Source code |
CCAIntegration | Man page Source code |
CalcDispersion | Man page Source code |
CalcN | Source code |
CalcPerturbSig | Man page Source code |
CalculateBarcodeInflections | Man page Source code |
CaseMatch | Man page Source code |
CellCycleScoring | Man page Source code |
CellPlot | Man page |
CellScatter | Man page Source code |
CellSelector | Man page Source code |
Cells | Man page |
Cells.SCTAssay | Source code |
Cells.SCTModel | Man page Source code |
Cells.STARmap | Man page Source code |
Cells.SlideSeq | Man page Source code |
Cells.VisiumV1 | Man page Source code |
CellsByIdentities | Man page |
CellsByImage | Man page Source code |
CenterTitle | Man page Source code |
CheckDots | Source code |
CheckDuplicateCellNames | Source code |
CheckFeatures | Source code |
CheckGC | Source code |
CheckMetaVarName | Source code |
ChunkPoints | Source code |
ClassifyCells | Source code |
Col2Hex | Source code |
CollapseEmbeddingOutliers | Man page Source code |
CollapseSpeciesExpressionMatrix | Man page Source code |
Collections | Source code |
ColorDimSplit | Man page Source code |
CombinePlots | Man page Source code |
Command | Man page |
ComputeRMetric | Source code |
ComputeSNN | Source code |
ComputeSNNwidth | Source code |
ConstructNNMat | Source code |
CountAnchors | Source code |
CountSketch | Man page Source code |
CreateAnn | Source code Source code |
CreateAssayObject | Man page |
CreateCategoryMatrix | Man page Source code |
CreateDimReducObject | Man page |
CreateDummyAssay | Source code |
CreateIntegrationGroups | Source code |
CreateSCTAssay | Source code |
CreateSCTAssayObject | Man page Source code |
CreateSeuratObject | Man page |
CustomDistance | Man page Source code |
CustomNormalize | Source code |
CustomPalette | Man page Source code |
DESeq2DETest | Source code |
DEenrichRPlot | Man page Source code |
DEmethods_checkdots | Source code |
DEmethods_counts | Source code |
DEmethods_latent | Source code |
DEmethods_nocorrect | Source code |
DEmethods_noprefilter | Source code |
DFT | Source code |
DISP | Man page Source code |
DarkTheme | Man page Source code |
DefaultAssay | Man page |
DefaultAssay<- | Man page |
DefaultImage | Source code |
DefineNormalMixscape | Source code |
DietSeurat | Man page Source code |
DiffExpTest | Source code |
DiffTTest | Source code |
DifferentialAUC | Source code |
DifferentialLRT | Source code |
DimHeatmap | Man page Source code |
DimPlot | Man page Source code |
DimReduc-class | Man page |
DirectSNNToFile | Source code |
DiscretePalette | Man page Source code |
Distances | Man page |
DoHeatmap | Man page Source code |
DotPlot | Man page Source code |
ElbowPlot | Man page Source code |
Embeddings | Man page |
EmpiricalP | Source code |
ExIPlot | Source code |
ExpMean | Man page Source code |
ExpSD | Man page Source code |
ExpVar | Man page Source code |
Extend | Source code |
ExtractField | Source code |
FacetTheme | Source code |
FastCov | Source code |
FastCovMats | Source code |
FastExpMean | Source code |
FastLogVMR | Source code |
FastRBind | Source code |
FastRPCAIntegration | Man page Source code |
FastRowScale | Man page Source code |
FastSparseRowScale | Source code |
FastSparseRowScaleWithKnownStats | Source code |
FeatureHeatmap | Man page |
FeatureLocator | Man page Source code |
FeaturePlot | Man page Source code |
FeatureScatter | Man page Source code |
FeatureSketch | Source code |
Features.SCTAssay | Source code |
Features.SCTModel | Source code |
FetchData | Man page |
FetchData.VisiumV1 | Source code |
FetchResidualSCTModel | Man page Source code |
FetchResiduals | Man page Source code |
FetchResiduals_reference | Man page Source code |
FilterAnchors | Source code |
FilterObjects | Source code |
FilterSlideSeq | Man page Source code |
FindAllMarkers | Man page Source code |
FindAllMarkersNode | Man page |
FindAnchorPairs | Source code |
FindAnchors | Source code |
FindAnchors_v3 | Source code |
FindAnchors_v5 | Source code |
FindAssayAnchor | Source code |
FindBridgeAnchor | Man page Source code |
FindBridgeIntegrationAnchors | Man page Source code |
FindBridgeTransferAnchors | Man page Source code |
FindClusters | Man page Source code |
FindClusters.Seurat | Man page Source code |
FindClusters.default | Man page Source code |
FindConservedMarkers | Man page Source code |
FindIntegrationAnchors | Man page Source code |
FindIntegrationMatrix | Source code |
FindMarkers | Man page Source code |
FindMarkers.Assay | Man page Source code |
FindMarkers.DimReduc | Man page Source code |
FindMarkers.SCTAssay | Man page Source code |
FindMarkers.Seurat | Man page Source code |
FindMarkers.default | Man page Source code |
FindMarkersNode | Man page |
FindModalityWeights | Source code |
FindMultiModalNeighbors | Man page Source code |
FindNN | Source code |
FindNeighbors | Man page Source code |
FindNeighbors.Assay | Man page Source code |
FindNeighbors.Seurat | Man page Source code |
FindNeighbors.default | Man page Source code |
FindNeighbors.dist | Man page Source code |
FindObject | Source code |
FindSpatiallyVariableFeatures | Man page Source code |
FindSpatiallyVariableFeatures.Assay | Man page Source code |
FindSpatiallyVariableFeatures.Seurat | Man page Source code |
FindSpatiallyVariableFeatures.StdAssay | Man page Source code |
FindSpatiallyVariableFeatures.default | Man page Source code |
FindSubCluster | Man page Source code |
FindThresh | Source code |
FindTransferAnchors | Man page Source code |
FindVariableFeatures | Man page Source code |
FindVariableFeatures.Assay | Man page Source code |
FindVariableFeatures.SCTAssay | Man page Source code |
FindVariableFeatures.Seurat | Man page Source code |
FindVariableFeatures.StdAssay | Source code |
FindVariableFeatures.V3Matrix | Man page Source code |
FindVariableFeatures.default | Source code |
FindVariableGenes | Man page |
FindWeights | Source code |
FindWeightsC | Source code |
FindWeightsNN | Source code |
FoldChange | Man page Source code |
FoldChange.Assay | Man page Source code |
FoldChange.DimReduc | Man page Source code |
FoldChange.SCTAssay | Man page Source code |
FoldChange.Seurat | Man page Source code |
FoldChange.default | Man page Source code |
FontSize | Man page Source code |
GGpointToBase | Source code |
GGpointToPlotlyBuild | Source code |
GLMDETest | Source code |
GaussianSketch | Man page Source code |
GenePlot | Man page |
GeneSymbolThesarus | Man page Source code |
GetAllInternalNodes | Source code |
GetAssay | Man page Source code |
GetAssay.Seurat | Man page Source code |
GetAssayData | Man page |
GetCellOffsets | Source code |
GetDescendants | Source code |
GetFeatureGroups | Source code |
GetImage | Man page |
GetImage.STARmap | Man page Source code |
GetImage.SlideSeq | Man page Source code |
GetImage.VisiumV1 | Man page Source code |
GetIntegrationData | Man page Source code |
GetLeftDescendants | Source code |
GetMissingPerturb | Source code |
GetResidual | Man page Source code |
GetResidualSCTModel | Source code |
GetResidualsChunked | Source code |
GetRightDescendants | Source code |
GetTissueCoordinates | Man page |
GetTissueCoordinates.STARmap | Man page Source code |
GetTissueCoordinates.SlideSeq | Man page Source code |
GetTissueCoordinates.VisiumV1 | Man page Source code |
GetTissueCoordinates.VisiumV2 | Man page Source code |
GetTransferPredictions | Man page Source code |
GetXYAesthetics | Source code |
Graph-class | Man page |
GraphToNeighborHelper | Source code |
GroupCorrelation | Man page Source code |
GroupCorrelationPlot | Man page Source code |
GroupSingletons | Source code |
HTODemux | Man page Source code |
HTOHeatmap | Man page Source code |
HVFInfo | Man page |
HVFInfo.SCTAssay | Man page Source code |
HarmonyIntegration | Man page Source code |
HnswNN | Source code |
HoverLocator | Man page Source code |
ICAPlot | Man page |
IFeaturePlot | Man page Source code |
ISpatialDimPlot | Man page Source code |
ISpatialFeaturePlot | Man page Source code |
Idents | Man page |
Idents<- | Man page |
IdentsToCells | Source code |
ImageDimPlot | Man page Source code |
ImageFeaturePlot | Man page Source code |
Images | Man page |
Index | Man page |
Index<- | Man page |
Indices | Man page |
IntegrateData | Man page Source code |
IntegrateDataC | Source code |
IntegrateEmbeddings | Man page Source code |
IntegrateEmbeddings.IntegrationAnchorSet | Man page Source code |
IntegrateEmbeddings.TransferAnchorSet | Man page Source code |
IntegrateLayers | Man page Source code |
IntegrationAnchorSet | Man page |
IntegrationAnchorSet-class | Man page |
IntegrationData | Man page |
IntegrationData-class | Man page |
IntegrationReferenceIndex | Source code |
Intensity | Man page Source code |
Interleave | Source code |
InvertCoordinate | Source code |
InvertHex | Source code |
IsGlobal | Man page |
IsMatrixEmpty | Source code |
IsSCT | Source code |
IsVSTout | Source code |
JLEmbed | Source code |
JS | Man page |
JS<- | Man page |
JackRandom | Source code |
JackStraw | Man page Source code |
JackStrawData-class | Man page |
JackStrawPlot | Man page Source code |
JointPCAIntegration | Man page Source code |
Key | Man page |
Key<- | Man page |
L2CCA | Man page Source code |
L2Dim | Man page Source code |
L2Norm | Source code Source code |
LRDETest | Source code |
LabelClusters | Man page Source code |
LabelPoints | Man page Source code |
Labeler | Man page |
LengthCheck | Source code |
LeverageScore | Man page Source code |
LeverageScore.Assay | Man page |
LeverageScore.Seurat | Man page Source code |
LeverageScore.StdAssay | Man page Source code |
LeverageScore.default | Man page Source code |
LinkedDimPlot | Man page Source code |
LinkedFeaturePlot | Man page Source code |
LinkedPlot | Man page |
LinkedPlots | Man page |
Load10X_Spatial | Man page |
LoadAkoya | Man page Source code |
LoadAnnoyIndex | Man page Source code |
LoadCurioSeeker | Man page Source code |
LoadHuBMAPCODEX | Man page Source code |
LoadNanostring | Man page Source code |
LoadSTARmap | Man page Source code |
LoadVizgen | Man page Source code |
LoadXenium | Man page Source code |
Loadings | Man page |
Loadings<- | Man page |
LocalMaxima | Source code |
LocalStruct | Man page Source code |
LogNorm | Source code |
LogNormalize | Man page Source code |
LogNormalize.IterableMatrix | Source code |
LogNormalize.V3Matrix | Man page Source code |
LogNormalize.data.frame | Man page Source code |
LogNormalize.default | Man page Source code |
LogSeuratCommand | Man page |
LogVMR | Man page Source code |
Luminance | Man page Source code |
MASTDETest | Source code |
MULTIseqDemux | Man page Source code |
MVP | Man page Source code |
MakeLabels | Source code |
MapQuery | Man page Source code |
MapQueryData | Source code |
MapVals | Source code |
MappingScore | Man page Source code |
MappingScore.AnchorSet | Man page Source code |
MappingScore.default | Man page Source code |
MarkerTest | Source code |
MatrixRowShuffle | Source code |
MaxN | Source code |
MeanRange | Source code |
MeanVarPlot | Man page |
Melt | Source code |
MergeNode | Source code |
MergeSparseMatrices | Source code |
MetaFeature | Man page Source code |
MinMax | Man page Source code |
Misc | Man page |
Misc<- | Man page |
MixingMetric | Man page Source code |
MixscapeHeatmap | Man page Source code |
MixscapeLDA | Man page Source code |
ModalityWeights | Man page |
ModalityWeights-class | Man page |
ModifyParam | Source code |
MultiExIPlot | Source code |
MultiModalNN | Source code |
NBModelComparison | Source code |
NBResiduals | Source code |
NNHelper | Source code |
NNPlot | Man page Source code |
NNdist | Source code |
NNtoGraph | Man page Source code |
NNtoMatrix | Source code |
Neighbor-class | Man page |
Neighbors | Man page |
NoAxes | Man page Source code |
NoGrid | Man page Source code |
NoLegend | Man page Source code |
NodeHasChild | Source code |
NodeHasOnlyChildren | Source code |
NormalizeData | Man page Source code |
NormalizeData.Assay | Man page Source code |
NormalizeData.Seurat | Man page Source code |
NormalizeData.StdAssay | Source code |
NormalizeData.V3Matrix | Man page Source code |
NormalizeData.default | Source code |
NullImage | Source code |
OldParamHints | Source code |
Online | Source code |
PCAPlot | Man page Source code |
PCASigGenes | Man page Source code |
PCHeatmap | Man page Source code |
PairwiseIntegrateReference | Source code |
Parenting | Source code |
ParseMergePair | Source code |
ParseRow | Source code |
PercentAbove | Man page Source code |
PercentageFeatureSet | Man page Source code |
PerformDE | Source code |
PerturbDiff | Source code |
PlotBuild | Source code |
PlotClusterTree | Man page Source code |
PlotPerturbScore | Man page Source code |
PointLocator | Source code |
PolyDimPlot | Man page Source code |
PolyFeaturePlot | Man page Source code |
PredictAssay | Man page Source code |
PrepDR | Source code |
PrepDR5 | Source code |
PrepLDA | Man page Source code |
PrepSCTFindMarkers | Man page Source code |
PrepSCTFindMarkers.V5 | Source code |
PrepSCTIntegration | Man page Source code |
PrepVSTResults | Source code |
PrepareBridgeReference | Man page |
Project | Man page |
Project<- | Man page |
ProjectCellEmbeddings | Man page Source code |
ProjectCellEmbeddings.Assay | Man page Source code |
ProjectCellEmbeddings.IterableMatrix | Man page Source code |
ProjectCellEmbeddings.SCTAssay | Man page Source code |
ProjectCellEmbeddings.Seurat | Man page Source code |
ProjectCellEmbeddings.StdAssay | Man page Source code |
ProjectCellEmbeddings.default | Man page Source code |
ProjectData | Man page Source code |
ProjectDim | Man page Source code |
ProjectDimReduc | Man page Source code |
ProjectIntegration | Man page Source code |
ProjectSVD | Source code |
ProjectUMAP | Man page Source code |
ProjectUMAP.DimReduc | Man page Source code |
ProjectUMAP.Seurat | Man page Source code |
ProjectUMAP.default | Man page Source code |
ProjectVec | Source code |
Projected | Source code |
PseudobulkExpression | Man page Source code |
PseudobulkExpression.Assay | Man page Source code |
PseudobulkExpression.Seurat | Man page Source code |
PseudobulkExpression.StdAssay | Man page Source code |
PurpleAndYellow | Man page Source code |
QuantileSegments | Source code |
RPCAIntegration | Man page Source code |
Radius | Man page |
Radius.STARmap | Man page Source code |
Radius.SlideSeq | Man page Source code |
Radius.VisiumV1 | Man page Source code |
Radius.VisiumV2 | Man page |
RandomName | Source code |
ReLu | Source code |
Read10X | Man page Source code |
Read10X_Coordinates | Man page Source code |
Read10X_Image | Man page Source code |
Read10X_ScaleFactors | Man page Source code |
Read10X_h5 | Man page Source code |
Read10X_probe_metadata | Man page Source code |
ReadAkoya | Man page Source code |
ReadMtx | Man page Source code |
ReadNanostring | Man page Source code |
ReadParseBio | Man page Source code |
ReadSTARsolo | Man page Source code |
ReadSlideSeq | Man page Source code |
ReadVitessce | Man page Source code |
ReadVizgen | Man page Source code |
ReadXenium | Man page Source code |
ReciprocalProject | Source code |
Reductions | Man page |
ReferenceRange | Source code |
RegressOutMatrix | Source code |
RegroupIdents | Man page Source code |
RegularizedTheta | Source code |
RelativeCounts | Man page Source code |
RemoveLastField | Source code |
RenameCells | Man page |
RenameCells.SCTAssay | Man page Source code |
RenameCells.STARmap | Man page Source code |
RenameCells.SlideSeq | Man page Source code |
RenameCells.VisiumV1 | Man page Source code |
RenameIdents | Man page |
ReorderIdent | Man page |
ReplaceColsC | Source code |
RestoreLegend | Man page Source code |
RidgePlot | Man page Source code |
RotatedAxis | Man page Source code |
RowMeanSparse | Source code |
RowMergeMatrices | Source code |
RowMergeSparseMatrices | Man page |
RowSparseCheck | Source code |
RowSumSparse | Source code |
RowVar | Source code |
RowVarSparse | Source code |
RunCCA | Man page Source code |
RunCCA.Seurat | Man page Source code |
RunCCA.default | Man page Source code |
RunGraphLaplacian | Man page Source code |
RunGraphLaplacian.Seurat | Man page Source code |
RunGraphLaplacian.default | Man page Source code |
RunICA | Man page Source code |
RunICA.Assay | Man page Source code |
RunICA.Seurat | Man page Source code |
RunICA.default | Man page Source code |
RunIntegration | Source code |
RunLDA | Man page Source code |
RunLDA.Assay | Man page Source code |
RunLDA.Seurat | Man page Source code |
RunLDA.default | Man page Source code |
RunLeiden | Source code |
RunMarkVario | Man page Source code |
RunMixscape | Man page Source code |
RunModularityClustering | Source code |
RunModularityClusteringCpp | Source code |
RunMoransI | Man page Source code |
RunPCA | Man page Source code |
RunPCA.Assay | Man page Source code |
RunPCA.Seurat | Man page Source code |
RunPCA.Seurat5 | Source code |
RunPCA.StdAssay | Source code |
RunPCA.default | Man page Source code |
RunPCA_Sparse | Source code |
RunSLSI | Man page Source code |
RunSLSI.Assay | Man page Source code |
RunSLSI.Seurat | Man page Source code |
RunSLSI.default | Man page Source code |
RunSPCA | Man page Source code |
RunSPCA.Assay | Man page Source code |
RunSPCA.Assay5 | Man page Source code |
RunSPCA.Seurat | Man page Source code |
RunSPCA.default | Man page Source code |
RunTSNE | Man page Source code |
RunTSNE.DimReduc | Man page Source code |
RunTSNE.Seurat | Man page Source code |
RunTSNE.dist | Man page Source code |
RunTSNE.matrix | Man page Source code |
RunUMAP | Man page Source code |
RunUMAP.Graph | Man page Source code |
RunUMAP.Neighbor | Man page Source code |
RunUMAP.Seurat | Man page Source code |
RunUMAP.default | Man page Source code |
RunUMISampling | Source code |
RunUMISamplingPerCell | Source code |
SCTAssay | Man page |
SCTAssay-class | Man page |
SCTModel | Man page |
SCTModel_to_vst | Source code |
SCTResults | Man page Source code |
SCTResults.SCTAssay | Man page Source code |
SCTResults.SCTModel | Man page Source code |
SCTResults.Seurat | Man page Source code |
SCTResults<- | Man page |
SCTResults<-.SCTAssay | Man page |
SCTResults<-.SCTModel | Man page |
SCTransform | Man page Source code |
SCTransform.Assay | Man page Source code |
SCTransform.IterableMatrix | Man page Source code |
SCTransform.Seurat | Man page Source code |
SCTransform.StdAssay | Source code |
SCTransform.default | Man page Source code |
SNN_SmallestNonzero_Dist | Source code |
STARmap | Man page |
STARmap-class | Man page |
SVFInfo | Man page |
SampleIntegrationOrder | Source code |
SampleUMI | Man page Source code |
SaveAnnoyIndex | Man page Source code |
ScaleColumn | Source code |
ScaleData | Man page Source code |
ScaleData.Assay | Man page Source code |
ScaleData.IterableMatrix | Man page Source code |
ScaleData.Seurat | Man page Source code |
ScaleData.StdAssay | Source code |
ScaleData.default | Man page Source code |
ScaleFactors | Man page Source code |
ScaleFactors.VisiumV1 | Man page Source code |
ScaleFactors.VisiumV2 | Man page |
ScoreAnchors | Source code |
ScoreHelper | Source code |
ScoreJackStraw | Man page Source code |
ScoreJackStraw.DimReduc | Man page Source code |
ScoreJackStraw.JackStrawData | Man page Source code |
ScoreJackStraw.Seurat | Man page Source code |
SelectIntegrationFeatures | Man page Source code |
SelectIntegrationFeatures5 | Man page Source code |
SelectSCTIntegrationFeatures | Man page Source code |
SetAssayData | Man page |
SetHighlight | Source code |
SetIdent | Man page |
SetIntegrationData | Man page Source code |
SetQuantile | Man page Source code |
Seurat | Man page |
Seurat-class | Man page |
Seurat-package | Man page |
SeuratAxes | Man page Source code |
SeuratCommand-class | Man page |
SeuratTheme | Man page Source code |
ShinyBrush | Source code |
SingleCorPlot | Man page Source code |
SingleDimPlot | Man page Source code |
SingleExIPlot | Man page Source code |
SingleImageMap | Man page Source code |
SingleImagePlot | Man page Source code |
SinglePolyPlot | Source code |
SingleRasterMap | Man page Source code |
SingleSpatialPlot | Man page Source code |
SketchData | Man page Source code |
SlideSeq | Man page |
SlideSeq-class | Man page |
SmoothLabels | Source code |
SparseMeanSd | Source code |
SparseRowVar | Source code |
SparseRowVar2 | Source code |
SparseRowVarStd | Source code |
SpatialDimPlot | Man page Source code |
SpatialFeaturePlot | Man page Source code |
SpatialImage-class | Man page |
SpatialPlot | Man page Source code |
SpatialTheme | Man page Source code |
SpatiallyVariableFeatures | Man page |
SpecificDimPlot | Source code |
SplitDotPlotGG | Man page |
SplitObject | Man page Source code |
Standardize | Source code |
StashIdent | Man page |
Stdev | Man page |
SubsetByBarcodeInflections | Man page Source code |
SubsetVST | Source code |
Sweep | Source code |
SweepNonzero | Source code |
SysExec | Source code |
TSNEPlot | Man page Source code |
ToNumeric | Source code |
Tool | Man page |
Tool<- | Man page |
Top | Source code |
TopCells | Man page Source code |
TopDEGenesMixscape | Source code |
TopDimFeatures | Source code |
TopFeatures | Man page Source code |
TopNeighbors | Man page Source code |
TransferAnchorSet | Man page |
TransferAnchorSet-class | Man page |
TransferData | Man page Source code |
TransferExpressionNN | Source code |
TransferLablesNN | Source code |
TransferSketchLabels | Man page Source code |
Transform | Source code |
TransformDataMatrix | Source code |
UMAPPlot | Man page Source code |
UnSketchEmbeddings | Man page Source code |
UpdateAssay | Source code |
UpdateDimReduction | Source code |
UpdateJackstraw | Source code |
UpdateKey | Source code |
UpdateSCTAssays | Man page Source code |
UpdateSeuratObject | Man page |
UpdateSlots | Source code |
UpdateSymbolList | Man page Source code |
VST | Man page Source code |
VST.IterableMatrix | Man page Source code |
VST.default | Man page Source code |
VST.dgCMatrix | Man page Source code |
VST.matrix | Man page Source code |
ValidateCellGroups | Source code |
ValidateDataForMerge | Source code |
ValidateParams_FindTransferAnchors | Source code |
ValidateParams_IntegrateEmbeddings_IntegrationAnchors | Source code |
ValidateParams_IntegrateEmbeddings_TransferAnchors | Source code |
ValidateParams_TransferData | Source code |
VariableFeaturePlot | Man page Source code |
VariableFeatures | Man page |
VariableFeatures.SCTAssay | Source code |
VariableFeatures.SCTModel | Source code |
VariableFeatures<- | Man page |
VariableGenePlot | Man page |
VisiumV1 | Man page |
VisiumV1-class | Man page |
VisiumV2 | Man page |
VisiumV2-class | Man page |
VizDimLoadings | Man page Source code |
VlnPlot | Man page Source code |
WhichCells | Man page |
WhiteBackground | Man page Source code |
WilcoxDETest | Source code |
WriteEdgeFile | Source code |
as.CellDataSet | Man page Source code |
as.CellDataSet.Seurat | Man page Source code |
as.Graph | Man page |
as.Neighbor | Man page |
as.Seurat | Man page |
as.Seurat.CellDataSet | Man page Source code |
as.Seurat.SingleCellExperiment | Man page Source code |
as.SingleCellExperiment | Man page Source code |
as.SingleCellExperiment.Seurat | Man page Source code |
as.data.frame.Matrix | Man page Source code |
as.sparse | Man page |
as.sparse.H5Group | Man page Source code |
as.sparse.IterableMatrix | Source code |
bimodLikData | Source code |
build.cellcomp.matrix | Source code |
cc.genes | Man page |
cc.genes.updated.2019 | Man page |
components | Man page |
components.SCTAssay | Source code |
contrast-theory | Man page |
crossprod_BPCells | Source code |
crossprod_DelayedAssay | Source code |
dim.STARmap | Source code |
dim.SlideSeq | Source code |
dim.VisiumV1 | Source code |
fast_dist | Source code |
fftRtsne | Source code |
fortify | Man page |
fortify-Spatial | Man page |
fortify.Centroids | Man page Source code |
fortify.Molecules | Man page Source code |
fortify.Segmentation | Man page Source code |
geom_spatial | Source code |
geom_spatial_interactive | Source code |
geom_split_violin | Source code |
impute_dist | Source code |
is.null.externalptr | Source code |
levels.SCTAssay | Man page Source code |
levels<-.SCTAssay | Man page |
merge.SCTAssay | Man page Source code |
reexports | Man page |
row_mean_dgcmatrix | Source code |
row_sum_dgcmatrix | Source code |
row_var_dgcmatrix | Source code |
scalefactors | Man page Source code |
subset.AnchorSet | Man page Source code |
subset.SCTAssay | Source code |
subset.STARmap | Source code |
subset.SlideSeq | Source code |
subset.VisiumV1 | Source code |
writing-integration | Man page |
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