API for Oshlack/splatter
Simple Simulation of Single-cell RNA Sequencing Data
| Global functions | |
|---|---|
| BASiCSEstimate | Man page Source code |
| BASiCSEstimate.SingleCellExperiment | Man page Source code |
| BASiCSEstimate.matrix | Man page Source code |
| BASiCSParams | Man page |
| BASiCSParams-class | Man page |
| BASiCSSimulate | Man page Source code |
| KersplatParams | Man page |
| KersplatParams-class | Man page |
| Lun2Params | Man page |
| Lun2Params-class | Man page |
| LunParams | Man page |
| LunParams-class | Man page |
| MFAParams | Man page |
| MFAParams-class | Man page |
| Params | Man page |
| Params-class | Man page |
| PhenoParams | Man page |
| PhenoParams-class | Man page |
| SCDDParams | Man page |
| SCDDParams-class | Man page |
| SimpleParams | Man page |
| SimpleParams-class | Man page |
| SparseDCParams | Man page |
| SparseDCParams-class | Man page |
| SplatParams | Man page |
| SplatParams-class | Man page |
| SplatPopParams | Man page |
| SplatPopParams-class | Man page |
| ZINBParams | Man page |
| ZINBParams-class | Man page |
| addFeatureStats | Source code |
| addGeneLengths | Man page Source code |
| bridge | Source code |
| bringItemsForward | Source code |
| checkDependencies | Source code |
| co.var | Source code |
| compareSCEs | Man page Source code |
| diffSCEs | Man page Source code |
| expandParams | Man page |
| expandParams,BASiCSParams-method | Man page |
| expandParams,LunParams-method | Man page |
| expandParams,Params-method | Man page |
| expandParams,SplatParams-method | Man page |
| expandParams,SplatPopParams-method | Man page |
| getBetaStepProbs | Source code |
| getCounts | Source code |
| getLNormFactors | Man page Source code |
| getParam | Man page |
| getParam,Params-method | Man page |
| getParams | Man page Source code |
| getPathOrder | Source code |
| kersplatEstBCV | Man page Source code |
| kersplatEstLib | Man page Source code |
| kersplatEstMean | Man page Source code |
| kersplatEstimate | Man page Source code |
| kersplatEstimate.SingleCellExperiment | Man page Source code |
| kersplatEstimate.matrix | Man page Source code |
| kersplatGenNetwork | Man page Source code |
| kersplatSample | Man page Source code |
| kersplatSelectRegs | Man page Source code |
| kersplatSetup | Man page Source code |
| kersplatSimAmbientCounts | Man page Source code |
| kersplatSimCellCounts | Man page Source code |
| kersplatSimCellMeans | Man page Source code |
| kersplatSimCounts | Man page Source code |
| kersplatSimGeneMeans | Man page Source code |
| kersplatSimLibSizes | Man page Source code |
| kersplatSimPaths | Man page Source code |
| kersplatSimulate | Man page Source code |
| listSims | Man page Source code |
| logistic | Source code |
| lun2Estimate | Man page Source code |
| lun2Estimate.SingleCellExperiment | Man page Source code |
| lun2Estimate.matrix | Man page Source code |
| lun2Simulate | Man page Source code |
| lunEstimate | Man page Source code |
| lunEstimate.SingleCellExperiment | Man page Source code |
| lunEstimate.matrix | Man page Source code |
| lunSimulate | Man page Source code |
| makeCompPanel | Man page Source code |
| makeDiffPanel | Man page Source code |
| makeOverallPanel | Man page Source code |
| mfaEstimate | Man page Source code |
| mfaEstimate.SingleCellExperiment | Man page Source code |
| mfaEstimate.matrix | Man page Source code |
| mfaSimulate | Man page Source code |
| minimiseSCE | Man page Source code |
| mockBulkMatrix | Man page Source code |
| mockBulkeQTL | Man page Source code |
| mockEmpiricalSet | Man page Source code |
| mockGFF | Man page Source code |
| mockVCF | Man page Source code |
| newBASiCSParams | Man page Source code |
| newKersplatParams | Man page Source code |
| newLun2Params | Man page Source code |
| newLunParams | Man page Source code |
| newMFAParams | Man page Source code |
| newParams | Man page |
| newPhenoParams | Man page Source code |
| newSCDDParams | Man page Source code |
| newSimpleParams | Man page Source code |
| newSparseDCParams | Man page Source code |
| newSplatParams | Man page Source code |
| newSplatPopParams | Man page Source code |
| newZINBParams | Man page Source code |
| paramsExpander | Man page Source code |
| phenoEstimate | Man page Source code |
| phenoEstimate.SingleCellExperiment | Man page Source code |
| phenoEstimate.matrix | Man page Source code |
| phenoSimulate | Man page Source code |
| rbindMatched | Source code |
| sampleDensity | Source code |
| scDDEstimate | Man page Source code |
| scDDEstimate.SingleCellExperiment | Man page Source code |
| scDDEstimate.default | Man page Source code |
| scDDEstimate.matrix | Man page Source code |
| scDDSimulate | Man page Source code |
| selectFit | Source code |
| setParam | Man page |
| setParam,BASiCSParams-method | Man page |
| setParam,KersplatParams-method | Man page |
| setParam,Lun2Params-method | Man page |
| setParam,LunParams-method | Man page |
| setParam,Params-method | Man page |
| setParam,PhenoParams-method | Man page |
| setParam,SCDDParams-method | Man page |
| setParam,SplatParams-method | Man page |
| setParam,SplatPopParams-method | Man page |
| setParam,ZINBParams-method | Man page |
| setParamUnchecked | Man page |
| setParamUnchecked,Params-method | Man page |
| setParams | Man page |
| setParams,KersplatParams-method | Man page |
| setParams,Params-method | Man page |
| setParams,SplatParams-method | Man page |
| setParamsUnchecked | Man page Source code |
| showDFs | Source code |
| showPP | Source code |
| showValues | Source code |
| simpleEstimate | Man page Source code |
| simpleEstimate.SingleCellExperiment | Man page Source code |
| simpleEstimate.matrix | Man page Source code |
| simpleSimulate | Man page Source code |
| sparseDCEstimate | Man page Source code |
| sparseDCEstimate.SingleCellExperiment | Man page Source code |
| sparseDCEstimate.matrix | Man page Source code |
| sparseDCSimulate | Man page Source code |
| sparsifyMatrices | Source code |
| splatEstBCV | Man page Source code |
| splatEstDropout | Man page Source code |
| splatEstLib | Man page Source code |
| splatEstMean | Man page Source code |
| splatEstOutlier | Man page Source code |
| splatEstimate | Man page Source code |
| splatEstimate.SingleCellExperiment | Man page Source code |
| splatEstimate.matrix | Man page Source code |
| splatPopAssignMeans | Man page Source code |
| splatPopCleanSCE | Man page Source code |
| splatPopConditionEffects | Man page Source code |
| splatPopConditionalEffects | Man page Source code |
| splatPopDesignBatches | Man page Source code |
| splatPopDesignConditions | Man page Source code |
| splatPopEstimate | Man page Source code |
| splatPopEstimateEffectSize | Man page Source code |
| splatPopEstimateMeanCV | Man page Source code |
| splatPopGroupEffects | Man page Source code |
| splatPopParseEmpirical | Man page Source code |
| splatPopParseGenes | Man page Source code |
| splatPopParseVCF | Man page Source code |
| splatPopQuantNorm | Man page Source code |
| splatPopQuantNormKey | Man page Source code |
| splatPopSimBatchEffects | Man page Source code |
| splatPopSimConditionalEffects | Man page Source code |
| splatPopSimEffects | Man page Source code |
| splatPopSimGeneMeans | Man page Source code |
| splatPopSimMeans | Man page Source code |
| splatPopSimulate | Man page Source code |
| splatPopSimulateMeans | Man page Source code |
| splatPopSimulateSC | Man page Source code |
| splatPopSimulateSample | Man page Source code |
| splatPopeQTLEffects | Man page Source code |
| splatSimBCVMeans | Man page Source code |
| splatSimBatchCellMeans | Man page Source code |
| splatSimBatchEffects | Man page Source code |
| splatSimCellMeans | Man page |
| splatSimDE | Man page |
| splatSimDropout | Man page Source code |
| splatSimGeneMeans | Man page Source code |
| splatSimGroupCellMeans | Man page Source code |
| splatSimGroupDE | Man page Source code |
| splatSimLibSizes | Man page Source code |
| splatSimPathCellMeans | Man page Source code |
| splatSimPathDE | Man page Source code |
| splatSimSingleCellMeans | Man page Source code |
| splatSimTrueCounts | Man page Source code |
| splatSimulate | Man page Source code |
| splatSimulateGroups | Man page Source code |
| splatSimulatePaths | Man page Source code |
| splatSimulateSingle | Man page Source code |
| splatter | Man page |
| splatter-package | Man page |
| summariseDiff | Man page Source code |
| summariseKS | Source code |
| summariseStats | Source code |
| tidyStatSumm | Source code |
| winsorize | Source code |
| zinbEstimate | Man page Source code |
| zinbEstimate.SingleCellExperiment | Man page Source code |
| zinbEstimate.matrix | Man page Source code |
| zinbSimulate | Man page Source code |
