API for drmjc/metaGSEA
Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons
| Global functions | |
|---|---|
| .edb.names | Source code |
| .gsea.get.classes.index.html | Source code |
| .gsea.rename.genesets | Source code |
| .import.gseaPreranked.topTable.file | Source code |
| .qplot.data | Man page |
| GMThyperGTest | Man page Source code |
| GSEAhyperGTest | Man page Source code |
| affy.pivot.table | Man page Source code |
| average.replicates.gct | Man page Source code |
| catplot.GSEA | Man page Source code |
| catplot.GSEA.2way | Man page Source code |
| catplot.GSEA.2way.vs.random | Man page Source code |
| catplot.GSEA.random | Man page Source code |
| chip2description | Man page Source code |
| collapse.gct | Man page Source code |
| collapse.gct.file | Man page Source code |
| collapse.gct2geneset | Man page Source code |
| convert.gct2submap | Man page Source code |
| convert.gsea.res2gct | Man page Source code |
| dist.gsea | Man page Source code |
| export.broad.cls | Man page Source code |
| export.broad.res | Man page Source code |
| export.gsea | Man page Source code |
| export.gsea.cdt | Man page Source code |
| export.gsea.chip | Man page Source code |
| export.gsea.edb | Man page Source code |
| export.gsea.gct | Man page Source code |
| export.gsea.gct.topTable | Man page Source code |
| export.gsea.gmt | Man page Source code |
| export.gsea.gtr | Man page Source code |
| export.gsea.leadingedge.analysis | Man page Source code |
| export.gsea.odf | Man page Source code |
| export.gsea.odf.lmFit | Man page Source code |
| export.gsea.rnk | Man page Source code |
| export.gsea.rnk.topTable | Man page Source code |
| export.gsea.rpt | Man page Source code |
| genepattern.HeatMapImage | Man page Source code |
| genepattern2spd | Man page Source code |
| gsea.collapse.probes | Source code |
| gsea.combine | Man page Source code |
| gsea.compare.runs.1gmt | Man page Source code |
| gsea.compare.runs.filter | Man page Source code |
| gsea.compare.runs.sort | Man page Source code |
| gsea.convert.clm2cls | Man page Source code |
| gsea.filter | Man page Source code |
| gsea.filter.edb | Man page Source code |
| gsea.fix.output | Man page Source code |
| gsea.fix.output.detailed.enrichment.results.html | Man page Source code |
| gsea.fix.output.geneset.report | Man page Source code |
| gsea.fix.output.index.html | Man page Source code |
| gsea.gct.probes2genes | Man page Source code |
| gsea.gct.select.features.columns | Man page Source code |
| gsea.gct.select.features.rows | Man page Source code |
| gsea.genesets2gct | Man page Source code |
| gsea.hardwire.rpt.paths | Man page Source code |
| gsea.leadingedge.distance | Man page Source code |
| gsea.length | Man page Source code |
| gsea.merge | Man page Source code |
| gsea.merge.dirs | Man page Source code |
| gsea.merge.edb | Man page Source code |
| gsea.merge.edb.dirs | Man page Source code |
| gsea.merge.tt | Man page Source code |
| gsea.rename.genesets | Man page Source code |
| gsea.rename.genesets.edb | Man page Source code |
| gsea.reorder.gmt.by.rnk | Man page Source code |
| gsea.split | Man page Source code |
| gsea.summarise | Man page Source code |
| gsea.topTable.sort | Man page Source code |
| gsea.which.gmt | Man page Source code |
| gsea2adjmat | Man page Source code |
| gsealist.find.geneset | Man page Source code |
| gsealist2adjmat | Man page Source code |
| gsealist2genesetlist | Man page Source code |
| import.genepattern.odf | Man page Source code |
| import.gsea | Man page Source code |
| import.gsea.chip | Man page Source code |
| import.gsea.clm | Man page Source code |
| import.gsea.cls | Man page Source code |
| import.gsea.compare.runs | Man page Source code |
| import.gsea.edb | Man page Source code |
| import.gsea.gct | Man page Source code |
| import.gsea.gmt | Man page Source code |
| import.gsea.gmx | Man page Source code |
| import.gsea.leadingedge | Man page Source code |
| import.gsea.res | Man page Source code |
| import.gsea.rnk | Man page Source code |
| import.gsea.rpt | Man page Source code |
| import.gsea.topTable | Man page Source code |
| is.gsea | Man page Source code |
| is.gsea.dir | Man page Source code |
| is.gsea.gct.file | Man page Source code |
| is.gsea.list | Man page Source code |
| is.gsea.res.file | Man page Source code |
| is.gsea.zip | Man page Source code |
| jacquard | Man page |
| jacquard,GeneSet,GeneSet-method | Man page |
| jacquard,character,character-method | Man page |
| jacquard,numeric,numeric-method | Man page |
| metaGSEA | Man page |
| metaGSEA-package | Man page |
| plclust.gsea | Man page Source code |
| plclust_in_colour | Man page Source code |
| plot_gsea.hclust | Man page |
| plot_gsea.leadingedge | Man page Source code |
| plot_gsea.leadingedge.HCL | Man page Source code |
| plot_gsea.leadingedge.HCL.1clusterPerPage | Man page Source code |
| plot_gsea.leadingedge.HCL.auto | Man page Source code |
| plot_gsea.leadingedge.HCL.simple | Man page Source code |
| plot_gsea.leadingedge.adjmat | Man page Source code |
| plot_gsea.leadingedge.barplot | Man page Source code |
| plot_gsea.leadingedge.barplot.auto | Man page Source code |
| plot_gsea.leadingedge.heatmap | Man page Source code |
| plot_gsea.leadingedge.heatmap.auto | Man page Source code |
| plot_gsea.res | Man page Source code |
| plot_gsea.statistic.histograms | Man page Source code |
| plot_gsea.venn | Man page Source code |
| plot_gsea.venn.auto | Man page Source code |
| plot_gseacmp.barplot | Man page Source code |
| print.gsea.venn | Man page Source code |
| reorder.gct | Man page Source code |
| reorder.gct.file | Man page Source code |
| subset.gsea | Man page Source code |
| test.broad.ftp | Man page Source code |
