Biocview "KEGG"

Access Pathways from Multiple Databases Through BioPAX and Pathway Commons

Activity and Diversity Analysis Module Graphical User Interface

ADAM: Activity and Diversity Analysis Module

A dimensionality reduction tool using gene detection pattern to mitigate noisy expression profile of scRNA-seq

A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC

A metric to determine the biological quality of gene clusters

An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway

Annotate sequences with KEGG pathways

Annotate transcripts and predicted protein sequences

An R package for pathway analysis using topological information

An R/shiny package for microbiome functional enrichment analysis

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

A Systems Biology Approach for Drug Repurposing

A tool set for 3D Trans-Omic network visualization with Cytoscape

A universal enrichment tool for interpreting omics data

Bayesian clustering and imputationa of single cell methylomes

Better prediction by use of co-data: Adaptive group-regularized ridge regression

biodb, a library and a development framework for connecting to chemical and biological databases

biodbKegg, a library for connecting to the KEGG Database

Build Annotation From Online Database

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)

Codon Usage Analysis and Prediction of Gene Expressivity

co-expressed gene-set enrichment analysis

DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments

dgeAnalysis

Differential Expression Analysis for RNA-seq data through a robust variance component test

Ensemble of Gene Set Enrichment Analyses

Environment for Gene Expression Searching Combined with Functional Enrichment Analysis

Exploration and Significant Biology on a Gene Set.

Fast and Interpretable Consensus Clustering via Minipatch Learning

Functional analysis of metabolic and transcriptomic data

Functional Enrichment analysis

GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDC

Gene set enrichment data structures and methods

GRAPH Interaction from pathway Topological Environment

graph support for KO, KEGG Orthology

HTSanalyzeR2: An R package for functional annotation, network analysis and time series analysis of high-throughput data

Integrating microRNA expression into signaling pathways for pathway analysis

Integrating Multi-Omic Network Data With Summay-Level GWAS Data

Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens

Interpretation and enrichment for metabolomics data

KEGG analysis and visualizing of differentially expressed genes

KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

Learn and Apply Cell Type Signatures

Massive and Integrative Gene Set Analysis

Metabolite Set Enrichment Analysis (MSEA)

MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways

Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape

MLP

Model higher-order methylation profiles

netboxr

Network-based prioritization of putative metabolite IDs

OmniPath web service client and more

Package for CTDbase data query, visualization and downstream analysis

Packaging common Seurat analysis tasks

PaIRKAT

Pathway Enrichment Analysis Based on Bayesian Network

Pathway Enrichment Based on Differential Causal Effects

Pathway fingerprinting for analysis of gene expression arrays

PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons

Permutation-Based Confidence for Molecular Classification

Plot Gene Ontology and KEGG pathway Annotation and Abundance

PoTRA: Pathways of Topological Rank Analysis

Principal Coordinates and Hotelling's T-Square method

Quantification and Visualization of Variations of Splicing in Population

Quantification and Visulization of Variations of Splicing in Population

Random walk with restart on multiplex and heterogeneous Networks

Representing Different Biological Sets

R Interface to UniProt Web Services

R Interface with InterMine-Powered Databases

RNASeqR: an R package for automated two-group RNA-Seq analysis workflow

Signature Overrepresentation Analysis

signet: Selection Inference in Gene NETworks

StarBioTrek

statistical analysis and visualization of functional profiles for genes and gene clusters

Statistical Analysis of the GeneChip

Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)

Untargeted LC-MS data annotation

Visualization of Functional Enrichment Result

Visualize all edges within a KEGG pathway and overlay LINCS data

Visualize all edges within a KEGG pathway and overlay LINCS data [option]

Visualize biclusters identified in gene expression data

Biocview "KEGG"

R Package Documentation

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