API for sesame
Tools For Analyzing Illumina Infinium DNA Methylation Arrays
| Global functions | |
|---|---|
| .backgroundCorrCh1 | Source code |
| .backgroundCorrectionNoobCh1 | Source code |
| .optimizeCellComposition | Source code |
| BetaValueToMValue | Man page Source code |
| DML | Man page Source code |
| DMR | Man page Source code |
| Hv.age2response | Source code |
| Hv.response2age | Source code |
| IG | Man page |
| IG,SigSet-method | Man page |
| IG2 | Source code |
| IG<- | Man page |
| IG<-,SigSet-method | Man page |
| II | Man page |
| II,SigSet-method | Man page |
| II<- | Man page |
| II<-,SigSet-method | Man page |
| IR | Man page |
| IR,SigSet-method | Man page |
| IR2 | Source code |
| IR<- | Man page |
| IR<-,SigSet-method | Man page |
| MValueToBetaValue | Man page Source code |
| RGChannelSet1ToSigSet | Source code |
| RGChannelSetToSigSets | Man page Source code |
| SNPcheck | Man page Source code |
| SigSet | Man page Source code |
| SigSet-class | Man page |
| SigSetList | Man page Source code |
| SigSetList-class | Man page |
| SigSetList-methods | Man page |
| SigSetListFromIDATs | Man page Source code |
| SigSetListFromPath | Man page Source code |
| SigSetToRGChannel | Source code |
| SigSetToRatioSet | Man page Source code |
| SigSetsToRGChannelSet | Man page Source code |
| _PACKAGE | Man page |
| as.data.frame.sesameQC | Man page Source code |
| binReadNumeric | Source code |
| binSignals | Man page Source code |
| binWriteNumeric | Source code |
| bisConversionControl | Man page Source code |
| buildControlMatrix450k | Man page Source code |
| chipAddressToSignal | Man page Source code |
| cleanRefSet | Source code |
| cnSegmentation | Man page Source code |
| createUCSCtrack | Man page Source code |
| ctl | Man page |
| ctl,SigSet-method | Man page |
| ctl<- | Man page |
| ctl<-,SigSet-method | Man page |
| deIdentify | Man page Source code |
| detectionMask | Man page Source code |
| detectionPfixedNorm | Man page Source code |
| detectionPnegEcdf | Man page Source code |
| detectionPnegNorm | Man page Source code |
| detectionPnegNormGS | Man page Source code |
| detectionPnegNormTotal | Man page Source code |
| detectionPoobEcdf | Man page Source code |
| detectionZero | Man page Source code |
| dichotomize | Source code |
| diffRefSet | Man page Source code |
| double.transform.f | Source code |
| dyeBiasCorr | Man page Source code |
| dyeBiasCorrMostBalanced | Man page Source code |
| dyeBiasCorrTypeINorm | Man page Source code |
| dyeBiasCorrTypeINormG2R | Source code |
| dyeBiasCorrTypeINormMpU | Source code |
| dyeBiasCorrTypeINormR2G | Source code |
| errFunc | Source code |
| estimateCellComposition | Man page Source code |
| estimateLeukocyte | Man page Source code |
| extra | Man page |
| extra,SigSet-method | Man page |
| extra<- | Man page |
| extra<-,SigSet-method | Man page |
| formatVCF | Man page Source code |
| genotype | Source code |
| getAFTypeIbySumAlleles | Man page Source code |
| getBetas | Man page Source code |
| getBinCoordinates | Man page Source code |
| getNormCtls | Man page Source code |
| getProbesByGene | Man page Source code |
| getProbesByRegion | Man page Source code |
| getProbesByTSS | Man page Source code |
| getRefSet | Man page Source code |
| getSegment | Man page Source code |
| getSexInfo | Man page Source code |
| getg0 | Source code |
| guessMinfiAnnotation | Source code |
| inferEthnicity | Man page Source code |
| inferPlatform | Source code |
| inferSex | Man page Source code |
| inferSexKaryotypes | Man page Source code |
| inferTypeIChannel | Man page Source code |
| initFileSet | Man page Source code |
| initialize,SigSet-method | Man page |
| leftRightMerge1 | Source code |
| makeExampleSeSAMeDataSet | Man page Source code |
| makeExampleTinyEPICDataSet | Man page Source code |
| mapFileSet | Man page Source code |
| meanIntensity | Man page Source code |
| negControls | Source code |
| noob | Man page Source code |
| noobsb | Man page Source code |
| oobG | Man page |
| oobG,SigSet-method | Man page |
| oobG2 | Source code |
| oobG<- | Man page |
| oobG<-,SigSet-method | Man page |
| oobR | Man page |
| oobR,SigSet-method | Man page |
| oobR2 | Source code |
| oobR<- | Man page |
| oobR<-,SigSet-method | Man page |
| openSesame | Man page Source code |
| openSesameToFile | Man page Source code |
| pOOBAH | Man page |
| parseGEOSignalABFile | Man page Source code |
| pkgTest | Source code |
| platformMinfiToSm | Source code |
| platformSmToMinfi | Source code |
| plotCytoBand | Source code |
| plotTranscripts | Source code |
| predictAge | Source code |
| predictAgeHorvath353 | Man page Source code |
| predictAgePheno | Man page Source code |
| predictAgeSkinBlood | Man page Source code |
| print.fileSet | Man page Source code |
| print.sesameQC | Man page Source code |
| probeNames | Man page |
| probeNames,SigSet-method | Man page |
| pval | Man page |
| pval,SigSet-method | Man page |
| pval<- | Man page |
| pval<-,SigSet-method | Man page |
| qualityMask | Man page Source code |
| qualityRank | Man page Source code |
| reIdentify | Man page Source code |
| readFileSet | Man page Source code |
| readIDAT1 | Source code |
| readIDATpair | Man page Source code |
| reopenSesame | Man page Source code |
| searchIDATprefixes | Man page Source code |
| segmentBins | Man page Source code |
| sesame | Man page |
| sesame-package | Man page |
| sesameQC | Man page Source code |
| sesamize | Man page Source code |
| show,SigSet-method | Man page |
| show,SigSetList-method | Man page |
| signalMU | Man page Source code |
| sliceFileSet | Man page Source code |
| smessage | Source code |
| subsetSignal | Man page Source code |
| topLoci | Man page Source code |
| topSegments | Man page Source code |
| totalIntensities | Man page Source code |
| totalIntensityZscore | Man page Source code |
| train.model.lm | Source code |
| twoCompsDiff | Source code |
| twoCompsEst2 | Man page Source code |
| updateSigSet | Source code |
| visualizeGene | Man page Source code |
| visualizeProbes | Man page Source code |
| visualizeRegion | Man page Source code |
| visualizeSegments | Man page Source code |
