Files in nlmixr2/rxode2
Facilities for Simulating from ODE-Based Models

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.covrignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/rhub.yaml
.github/workflows/test-coverage.yaml
.gitignore
.lintr
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/000.R R/CTS.R R/DollarNames.R R/RcppExports.R R/asFunction.R R/asIni.R R/asModel.R R/asRxui.R R/assert.R R/build.R R/collectWarnings.R R/confint.R R/d.R R/dfIni.R R/dfWishart.R R/dsl.R R/elu.R R/err-foceiBase.R R/err-sim.R R/err.R R/et.R R/etTran.R R/fixef.R R/forder.R R/format.R R/gelu.R R/genShinyApp.template.R R/geom-amt.R R/geom-cens.R R/getBaseSim.R R/intern.R R/linMod.R R/llik.R R/lrelu.R R/modelExtract.R R/modlib.R R/mu-cov-downgrade.R R/mu.R R/parseFuns.R R/piping-ini.R R/piping-model.R R/piping-update.R R/piping.R R/plot.R R/prelu.R R/print.R R/progress.R R/reexport.R R/register-s3.R R/relu.R R/rudf.R R/rudfui.R R/rxCbindStudyIndividual.R R/rxFormat.R R/rxIndLin.R R/rxJacobian.R R/rxLinCmt.R R/rxOptExpr.R R/rxParams.R R/rxParseSuppressMsg.R R/rxPrune.R R/rxReq.R R/rxReservedKeywords.R R/rxResidualError.R R/rxShiny.R R/rxStack.R R/rxSymInv.R R/rxSyntaxFunctions.R R/rxUiBlessed.R R/rxUiGet.R R/rxValidate.R R/rxode-options.R R/rxode2.R R/rxrandom.R R/rxrandomui.R R/rxsolve.R R/selu.R R/softplus.R R/str.R R/summary.R R/swish.R R/symengine.R R/tran.R R/ui-assign-parts.R R/ui-bind.R R/ui-fix.R R/ui-getControl.R R/ui-rename.R R/ui.R R/units.R R/utils.R R/version.R README.Rmd README.md
_pkgdown.yml
authors.md build/buildRxODE.R build/depends.R build/dual.R build/refresh.R build/sensitivites.R
cleanup
cleanup.win
codecov.yml
configure
configure.win
cran-comments.md
data/rxReservedKeywords.rda
data/rxResidualError.rda
data/rxSyntaxFunctions.rda
demo/00Index
demo/demo1.R
inst/CITATION
inst/COPYRIGHTS
inst/Changes.txt
inst/THANKS
inst/WORDLIST
inst/include/rxode2.h
inst/include/rxode2_RcppExports.h
inst/include/rxode2_as.h
inst/include/rxode2_control.h
inst/include/rxode2_model_shared.c
inst/include/rxode2_model_shared.h
inst/include/rxode2parse.h
inst/include/rxode2parseGetTime.h
inst/include/rxode2parseHandleEvid.h
inst/include/rxode2parseSbuf.h
inst/include/rxode2parseStruct.h
inst/include/rxode2parse_control.h
inst/include/rxode2ptr.h
inst/include/rxode2random_fillVec.h
inst/include/sbuf.c
inst/po/en@quot/LC_MESSAGES/R-RxODE.mo
inst/po/en@quot/LC_MESSAGES/R-rxode2.mo
inst/po/en@quot/LC_MESSAGES/RxODE.mo
inst/reserved-keywords.csv
inst/residualErrors.csv
inst/syntax-functions.csv
inst/tools/workaround.R
inst/tran.g
inst/tutorials/rxode2-00-syntax/RxODE00syntax.Rmd
inst/tutorials/rxode2-00-syntax/images/expandTutorial.png
inst/tutorials/rxode2-01-events/images/expandTutorial.png
inst/tutorials/rxode2-01-events/rxode01events.Rmd
logo.png
man-roxygen/birthdayProblem.R man-roxygen/etExamples.R man-roxygen/rmdhunks/covariates.Rmd man-roxygen/rmdhunks/model-types.Rmd
man-roxygen/rmdhunks/nesting.Rmdh
man-roxygen/rmdhunks/packages.Rmdh
man-roxygen/rmdhunks/pipeline.Rmdh
man-roxygen/rmdhunks/prior-data.Rmd man-roxygen/rmdhunks/related-R-chunk.Rmd man-roxygen/rmdhunks/rxode2-install-hunk.Rmd man-roxygen/rmdhunks/rxode2-wt.Rmd man-roxygen/rmdhunks/shiny.Rmd man-roxygen/rmdhunks/sim-var.Rmd
man-roxygen/rmdhunks/single-subject.Rmdh
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man/findLhs.Rd man/forderForceBase.Rd man/gammap.Rd man/gammapDer.Rd man/gammapInv.Rd man/gammaq.Rd man/gammaqInv.Rd man/genShinyApp.template.Rd man/getBaseIniSimModel.Rd man/getBaseSimModel.Rd man/getBaseSymengineModel.Rd man/getRxThreads.Rd man/guide_none.Rd man/ini-set.Rd man/ini.Rd man/invWR1d.Rd man/is.rxEt.Rd man/is.rxSolve.Rd man/is.rxStackData.Rd man/lReLU.Rd man/linMod.Rd man/llikBeta.Rd man/llikBinom.Rd man/llikCauchy.Rd man/llikChisq.Rd man/llikExp.Rd man/llikF.Rd man/llikGamma.Rd man/llikGeom.Rd man/llikNbinom.Rd man/llikNbinomMu.Rd man/llikNorm.Rd man/llikPois.Rd man/llikT.Rd man/llikUnif.Rd man/llikWeibull.Rd man/logit.Rd man/lowergamma.Rd man/meanProbs.Rd man/model-set.Rd man/model.Rd man/modelExtract.Rd man/odeMethodToInt.Rd man/phi.Rd man/plot.rxSolve.Rd man/plus-.rxSolve.Rd man/print.rxCoef.Rd man/print.rxDll.Rd man/print.rxModelVars.Rd man/print.rxode2.Rd man/probit.Rd man/rLKJ1.Rd man/reexports.Rd man/rinvchisq.Rd man/rmdhunks/rxode2-cmt-assign.Rmd man/rmdhunks/rxode2-cmt-preassign-1.Rmd man/rmdhunks/rxode2-cmt-preassign-2.Rmd man/rmdhunks/rxode2-create-models.Rmd man/rmdhunks/rxode2-datasets.Rmd man/rmdhunks/rxode2-intro-chunk.Rmd man/rmdhunks/rxode2-syntax-hunk.Rmd man/rxAllowUnload.Rd man/rxAppendModel.Rd man/rxAssignControlValue.Rd man/rxAssignPtr.Rd man/rxBlockZeros.Rd man/rxC.Rd man/rxCat.Rd man/rxCbindStudyIndividual.Rd man/rxChain.Rd man/rxChain2.Rd man/rxClean.Rd man/rxCombineErrorLines.Rd man/rxCompile.Rd man/rxCondition.Rd man/rxControlUpdateSens.Rd man/rxCreateCache.Rd man/rxD.Rd man/rxDelete.Rd man/rxDemoteAddErr.Rd man/rxDerived.Rd man/rxDfdy.Rd man/rxDll.Rd man/rxDynLoad.Rd man/rxDynUnload.Rd man/rxErrTypeCombine.Rd man/rxEtDispatchSolve.Rd man/rxEvid.Rd man/rxExpandFEta_.Rd man/rxExpandGrid.Rd man/rxExpandGrid_.Rd man/rxExpandIfElse.Rd man/rxExpandSens2_.Rd man/rxExpandSens_.Rd man/rxFixPop.Rd man/rxForget.Rd man/rxFun.Rd man/rxFunParse.Rd man/rxGetControl.Rd man/rxGetDistributionSimulationLines.Rd man/rxGetLin.Rd man/rxGetModel.Rd man/rxGetSeed.Rd man/rxGetrxode2.Rd man/rxHtml.Rd man/rxIndLinState.Rd man/rxIndLinStrategy.Rd man/rxInits.Rd man/rxIntToBase.Rd man/rxIntToLetter.Rd man/rxInv.Rd man/rxIs.Rd man/rxIsCurrent.Rd man/rxIsLoaded.Rd man/rxLhs.Rd man/rxLock.Rd man/rxMd5.Rd man/rxModelVars.Rd man/rxModels_.Rd man/rxNorm.Rd man/rxOptExpr.Rd man/rxParams.Rd man/rxParseErr.Rd man/rxParsePk.Rd man/rxParsePred.Rd man/rxParseSetSilentErr.Rd man/rxParseSuppressMsg.Rd man/rxPkg.Rd man/rxPp.Rd man/rxPreferredDistributionName.Rd man/rxProgress.Rd man/rxPrune.Rd man/rxRateDur.Rd man/rxReload.Rd man/rxRemoveControl.Rd man/rxRename.Rd man/rxRepR0_.Rd man/rxReq.Rd man/rxReservedKeywords.Rd man/rxResidualError.Rd man/rxRmvn.Rd man/rxS.Rd man/rxSeedEng.Rd man/rxSetControl.Rd man/rxSetCovariateNamesForPiping.Rd man/rxSetIni0.Rd man/rxSetPipingAuto.Rd man/rxSetProd.Rd man/rxSetProgressBar.Rd man/rxSetSeed.Rd man/rxSetSilentErr.Rd man/rxSetSum.Rd man/rxSetupIni.Rd man/rxSetupScale.Rd man/rxShiny.Rd man/rxSimThetaOmega.Rd man/rxSolve.Rd man/rxSolveFree.Rd man/rxSolveSetup.Rd man/rxSplitPlusQ.Rd man/rxStack.Rd man/rxState.Rd man/rxSumProdModel.Rd man/rxSupportedFuns.Rd man/rxSuppressMsg.Rd man/rxSymInvChol.Rd man/rxSymInvCholCreate.Rd man/rxSymInvCholN.Rd man/rxSyncOptions.Rd man/rxSyntaxFunctions.Rd man/rxTempDir.Rd man/rxTheme.Rd man/rxToSE.Rd man/rxTrans.Rd man/rxUdfUi.Rd man/rxUdfUiControl.Rd man/rxUdfUiData.Rd man/rxUdfUiEst.Rd man/rxUdfUiIniDf.Rd man/rxUdfUiIniLhs.Rd man/rxUdfUiMv.Rd man/rxUdfUiNum.Rd man/rxUdfUiParsing.Rd man/rxUdfUiReset.Rd man/rxUiDecompress.Rd man/rxUiDeparse.Rd man/rxUiGet.Rd man/rxUnloadAll.Rd man/rxUse.Rd man/rxValidate.Rd man/rxVersion.Rd man/rxWithSeed.Rd man/rxbeta.Rd man/rxbinom.Rd man/rxcauchy.Rd man/rxchisq.Rd man/rxexp.Rd man/rxf.Rd man/rxgamma.Rd man/rxgeom.Rd man/rxnbinom.Rd man/rxnormV.Rd man/rxode2-set.Rd man/rxode2.Rd man/rxode2parse.Rd man/rxode2parseAssignPackagesToLoad.Rd man/rxode2parseAssignPointerTranslation.Rd man/rxode2parseAssignTranslation.Rd man/rxode2parseD.Rd man/rxode2parseGetPointerAssignment.Rd man/rxode2parseGetTranslation.Rd man/rxord.Rd man/rxpois.Rd man/rxt.Rd man/rxunif.Rd man/rxweibull.Rd man/softplus.Rd man/stat_amt.Rd man/stat_cens.Rd man/summary.rxDll.Rd man/summary.rxode2.Rd man/swapMatListWithCube.Rd man/testIniDf.Rd man/testRxLinCmt.Rd man/testRxUnbounded.Rd man/toTrialDuration.Rd man/update.rxUi.Rd man/uppergamma.Rd man/zeroRe.Rd
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po/R-rxode2.pot
po/R-zh_CN.po
po/rxode2.pot
po/zh_CN.po
src/Makevars.in
src/RcppExports.cpp
src/RxODE_types.h
src/approx.c
src/blas.h
src/boost.cpp
src/box.c
src/call_dvode.c
src/cbindThetaOmega.cpp
src/cbindThetaOmega.h
src/cfode.c
src/cfode_static.c
src/cfode_static.h
src/checkmate.cpp
src/checkmate.h
src/checkmate_stub.c
src/codegen.c
src/codegen.h
src/common.c
src/common.h
src/corfailure.c
src/correction.c
src/cvPost.cpp
src/daxpy.c
src/ddot.c
src/dgefa.c
src/dgesl.c
src/dgpadm.f
src/dlsoda.f
src/dop853.c
src/dop853.h
src/dscal.c
src/dsphiv.f
src/et.cpp
src/etTran.cpp
src/expandGrid.cpp
src/expm.cpp
src/fast_factor.cpp
src/fnorm.c
src/forder.cpp
src/genModelVars.c
src/genModelVars.h
src/getOption.c
src/getOption.h
src/handle_evid.c
src/idamax.c
src/init.c
src/install.libs.R
src/intdy.c
src/isEt.c
src/itostr.c
src/lincmt.c
src/lincmtB.cpp
src/lincmtB1.h
src/lsoda.c
src/lsoda.h
src/lsoda_internal.h
src/matexp.f
src/matexp_HM98.c
src/methodswitch.c
src/nearPD.cpp
src/nearPD.h
src/needSortDefines.h
src/omegaChol.c
src/opkda2.f
src/orderswitch.c
src/par_solve.cpp
src/par_solve.h
src/parseAllowAssign.h
src/parseAssignStr.h
src/parseCmtProperties.h
src/parseDdt.h
src/parseDfdy.h
src/parseFuns.h
src/parseFunsDiff.h
src/parseFunsDosing.h
src/parseFunsLinCmt.h
src/parseFunsNa.h
src/parseFunsRandom.h
src/parseIdentifier.h
src/parseIndLin.h
src/parseLevels.h
src/parseLinCmt.c
src/parseLinCmt.h
src/parseLinCmtAB.h
src/parseLinCmtAdjustPars.h
src/parseLinCmtCl.h
src/parseLinCmtTransAlpha.h
src/parseLinCmtTransCl.h
src/parseLinCmtTransK.h
src/parseLinCmtV.h
src/parseLogical.h
src/parseStatements.h
src/parseSyntaxErrors.h
src/parseVars.h
src/print_node.c
src/print_node.h
src/prja.c
src/qs.cpp
src/rprintf.c
src/rx2api.c
src/rx2api.h
src/rxData.cpp
src/rxData.h
src/rxInv.cpp
src/rxOptRep.cpp
src/rxStack.cpp
src/rxThreadData.h
src/rxode2_df.cpp
src/rxode2_df.h
src/rxomp.h
src/rxthreefry.cpp
src/rxthreefry.h
src/scaleh.c
src/seed.cpp
src/seed.h
src/solsy.c
src/stoda.c
src/strdup_printf.c
src/strncmp.c
src/strncmp.h
src/strncmpi.c
src/strncmpi.h
src/timsort.h
src/tran.c
src/tran.g.d_parser.h
src/tran.h
src/udf.cpp
src/utilc.c
src/utilcpp.cpp
src/vmnorm.c
tests/testthat.R
tests/testthat/433.qs
tests/testthat/data-cbind-study-individual.qs
tests/testthat/etTrans-drop.qs
tests/testthat/etTrans-drop.rds
tests/testthat/etTrans1.qs
tests/testthat/keep-756.qs
tests/testthat/model_default.txt
tests/testthat/si.qs
tests/testthat/test-000-modelVars.R tests/testthat/test-001-sum.R tests/testthat/test-100-cmt.R tests/testthat/test-activation.R tests/testthat/test-alag.R tests/testthat/test-as-ini.R tests/testthat/test-as-model.R tests/testthat/test-assert.R tests/testthat/test-assignReserved.R tests/testthat/test-backward.R tests/testthat/test-bad-dose.R tests/testthat/test-basic.R tests/testthat/test-binomProb.R tests/testthat/test-bioavailibility.R tests/testthat/test-cbind-study-individual.R tests/testthat/test-cholperm.R tests/testthat/test-cmt-order.R tests/testthat/test-convertId.R tests/testthat/test-cov.R tests/testthat/test-cvpost.R tests/testthat/test-data-frame.R
tests/testthat/test-data-setup.qs
tests/testthat/test-data-table.R tests/testthat/test-deSolve-events.R tests/testthat/test-demo.R tests/testthat/test-derived.R tests/testthat/test-dfRep.R tests/testthat/test-dfdy.R tests/testthat/test-dollar-names.R tests/testthat/test-dplyr.R tests/testthat/test-drop.R tests/testthat/test-dsl.R tests/testthat/test-et.R
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tests/testthat/test-etTrans-1.rds
tests/testthat/test-etTrans-780.qs
tests/testthat/test-etTrans.R tests/testthat/test-evid2.R tests/testthat/test-evid3.R tests/testthat/test-example-3-1.R
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tests/testthat/test-example-3-2.R tests/testthat/test-example-3-3.R tests/testthat/test-example-3-5-1.R tests/testthat/test-example-6.R tests/testthat/test-expand-grid.R tests/testthat/test-factorial.R tests/testthat/test-fixef.R tests/testthat/test-focei-variances.R tests/testthat/test-fun.R tests/testthat/test-gammap.R tests/testthat/test-gc.R tests/testthat/test-geom-amt.R tests/testthat/test-getindex.R tests/testthat/test-hmax.R tests/testthat/test-iCov.R tests/testthat/test-ifelse.R tests/testthat/test-ignore-state.R tests/testthat/test-ind-lin.R tests/testthat/test-infusion-bolus.R
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tests/testthat/test-ini.R tests/testthat/test-interp.R
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vignettes/.gitignore
vignettes/alpha-lincmt.csv
vignettes/articles/Integrating-User-Defined-Functions-into-rxode2.Rmd vignettes/articles/Modifying-Models.Rmd vignettes/build.R
vignettes/cl-lincmt.csv
vignettes/df.Rmdh
vignettes/eventTable-output-notebook-01.png
vignettes/eventTable-output-notebook-02.png
vignettes/events-classic.Rmdh
vignettes/events-et.Rmdh
vignettes/kel-lincmt.csv
vignettes/logo.png
vignettes/rxode2-cmt.Rmd vignettes/rxode2-covariates.Rmd vignettes/rxode2-data-frame.Rmd vignettes/rxode2-datasets.Rmd vignettes/rxode2-event-table.Rmd vignettes/rxode2-event-types.Rmd
vignettes/rxode2-event-types.Rmdh
vignettes/rxode2-events-classic.Rmd vignettes/rxode2-intro.Rmd vignettes/rxode2-model-types.Rmd vignettes/rxode2-nesting.Rmd vignettes/rxode2-pipeline.Rmd vignettes/rxode2-plot.Rmd vignettes/rxode2-prior-data.Rmd vignettes/rxode2-rxUse.Rmd vignettes/rxode2-shiny.Rmd vignettes/rxode2-sim-var.Rmd vignettes/rxode2-single-subject.Rmd vignettes/rxode2-speed.Rmd vignettes/rxode2-stiff.Rmd vignettes/rxode2-syntax.Rmd vignettes/rxode2-transit-compartments.Rmd vignettes/rxode2-tutorials.Rmd vignettes/rxode2-wt.Rmd
vignettes/theo_sd.qs
nlmixr2/rxode2 documentation built on Jan. 11, 2025, 8:48 a.m.