| assoc |
Man page
Source code
|
| assoc_adjust_from_bfile |
Man page
Source code
|
| assoc_from_bfile |
Man page
Source code
|
| assoc_qt |
Man page
Source code
|
| assoc_qt_covar |
Man page
Source code
|
| assoc_qt_on_plink2_bin_data |
Man page
Source code
|
| assoc_qt_on_plink2_bin_files |
Man page
Source code
|
| assoc_qt_on_plink_bin_data |
Man page
Source code
|
| assoc_qt_on_plink_bin_files |
Man page
Source code
|
| assoc_qt_on_plink_text_data |
Man page
Source code
|
| assoc_qt_on_plink_text_files |
Man page
Source code
|
| calc_additive_phenotype_values |
Man page
Source code
|
| calc_dominant_phenotype_values |
Man page
Source code
|
| calc_epistatic_phenotype_values |
Man page
Source code
|
| calc_random_case_control_phenotype_values |
Man page
Source code
|
| calc_random_phenotype_values |
Man page
Source code
|
| calc_rnorm_phenotype_values |
Man page
Source code
|
| calc_runif_phenotype_values |
Man page
Source code
|
| can_plink_version_and_data_can_work_together |
Man page
Source code
|
| check_allow_no_sex |
Man page
Source code
|
| check_assoc_data |
Man page
Source code
|
| check_assoc_params |
Man page
Source code
|
| check_assoc_qt_covar_data |
Man page
Source code
|
| check_assoc_qt_covar_params |
Man page
Source code
|
| check_assoc_qt_data |
Man page
Source code
|
| check_assoc_qt_params |
Man page
Source code
|
| check_assoc_qt_result |
Man page
Source code
|
| check_assoc_table |
Man page
Source code
|
| check_base_input_filename |
Man page
Source code
|
| check_base_output_filename |
Man page
Source code
|
| check_bed_table |
Man page
Source code
|
| check_bim_table |
Man page
Source code
|
| check_calc_phenotype_function |
Man page
Source code
|
| check_chromosome_number |
Man page
Source code
|
| check_chromosome_selector |
Man page
Source code
|
| check_confidence_interval |
Man page
Source code
|
| check_cov_table |
Man page
Source code
|
| check_data |
Man page
Source code
|
| check_empty_plinkr_folder |
Man page
Source code
|
| check_equal_number_of_snvs |
Man page
Source code
|
| check_fam_filename |
Man page
Source code
|
| check_fam_table |
Man page
Source code
|
| check_fid |
Man page
Source code
|
| check_fids |
Man page
Source code
|
| check_iid |
Man page
Source code
|
| check_iids |
Man page
Source code
|
| check_ld_window_r2 |
Man page
Source code
|
| check_maf |
Man page
Source code
|
| check_mafs |
Man page
Source code
|
| check_map_table |
Man page
Source code
|
| check_n_individuals |
Man page
Source code
|
| check_n_samples |
Man page
Source code
|
| check_n_snps |
Man page
Source code
|
| check_os |
Man page
Source code
|
| check_pca_result_filenames |
Man page
Source code
|
| check_ped_table |
Man page
Source code
|
| check_pgen_table |
Man page
Source code
|
| check_phe_file_ok_for_qt |
Man page
Source code
|
| check_phe_filename |
Man page
Source code
|
| check_phe_table |
Man page
Source code
|
| check_phe_table_ok_for_qt |
Man page
Source code
|
| check_phenotype_data |
Man page
Source code
|
| check_phenotype_data_filename |
Man page
Source code
|
| check_phenotype_data_table |
Man page
Source code
|
| check_phenotypes |
Man page
Source code
|
| check_plink2_bin_data |
Man page
Source code
|
| check_plink2_bin_filenames |
Man page
Source code
|
| check_plink_args |
Man page
Source code
|
| check_plink_bin_data |
Man page
Source code
|
| check_plink_bin_filenames |
Man page
Source code
|
| check_plink_filenames |
Man page
Source code
|
| check_plink_is_installed |
Man page
Source code
|
| check_plink_options |
Man page
Source code
|
| check_plink_optionses |
Man page
Source code
|
| check_plink_text_data |
Man page
Source code
|
| check_plink_text_filenames |
Man page
Source code
|
| check_plink_version |
Man page
Source code
|
| check_plink_version_and_data_can_work_together |
Man page
Source code
|
| check_psam_table |
Man page
Source code
|
| check_pvar_table |
Man page
Source code
|
| check_qassoc_table |
Man page
Source code
|
| check_random_samples_selector |
Man page
Source code
|
| check_random_snps_selector |
Man page
Source code
|
| check_sample_ids |
Man page
Source code
|
| check_sample_ids_filename |
Man page
Source code
|
| check_sample_selector |
Man page
Source code
|
| check_simulate_qt_params |
Man page
Source code
|
| check_single_sample_selector |
Man page
Source code
|
| check_single_snp_selector |
Man page
Source code
|
| check_snp |
Man page
Source code
|
| check_snp_range_selector |
Man page
Source code
|
| check_snp_selector |
Man page
Source code
|
| check_snp_window_selector |
Man page
Source code
|
| check_snvs |
Man page
Source code
|
| check_trait |
Man page
Source code
|
| check_traits |
Man page
Source code
|
| check_verbose |
Man page
Source code
|
| check_window_kb |
Man page
Source code
|
| clear_plink_folder |
Man page
Source code
|
| clear_plinkr_cache |
Man page
Source code
|
| compare_assoc_qt_speed |
Man page
Source code
|
| convert_bed_table_to_pgen_table |
Man page
Source code
|
| convert_bim_table_to_map_table |
Man page
Source code
|
| convert_pgen_table_to_bed_table |
Man page
Source code
|
| convert_plink2_bin_data_to_plink_bin_data |
Man page
Source code
|
| convert_plink2_bin_data_to_plink_text_data |
Man page
Source code
|
| convert_plink2_bin_files_to_plink_bin_files |
Man page
Source code
|
| convert_plink2_bin_files_to_plink_text_files |
Man page
Source code
|
| convert_plink_bin_data_to_ped_table |
Man page
Source code
|
| convert_plink_bin_data_to_plink2_bin_data |
Man page
Source code
|
| convert_plink_bin_data_to_plink_text_data |
Man page
Source code
|
| convert_plink_bin_files_to_plink2_bin_files |
Man page
Source code
|
| convert_plink_bin_files_to_plink_text_files |
Man page
Source code
|
| convert_plink_bin_files_to_plink_vcf_files |
Man page
Source code
|
| convert_plink_text_data_to_plink2_bin_data |
Man page
Source code
|
| convert_plink_text_data_to_plink_bin_data |
Man page
Source code
|
| convert_plink_text_files_to_plink2_bin_files |
Man page
Source code
|
| convert_plink_text_files_to_plink_bin_files |
Man page
Source code
|
| convert_psam_table_to_fam_table |
Man page
Source code
|
| convert_pvar_table_to_bim_table |
Man page
Source code
|
| create_additive_trait |
Man page
Source code
|
| create_assoc_args |
Man page
Source code
|
| create_assoc_data |
Man page
Source code
|
| create_assoc_params |
Man page
Source code
|
| create_assoc_qt_args |
Man page
Source code
|
| create_assoc_qt_args_on_plink2_bin_data |
Man page
Source code
|
| create_assoc_qt_args_on_plink2_bin_filenames |
Man page
Source code
|
| create_assoc_qt_args_on_plink_bin_data |
Man page
Source code
|
| create_assoc_qt_args_on_plink_bin_filenames |
Man page
Source code
|
| create_assoc_qt_args_on_plink_text_data |
Man page
Source code
|
| create_assoc_qt_args_on_plink_text_filenames |
Man page
Source code
|
| create_assoc_qt_covar_args |
Man page
Source code
|
| create_assoc_qt_covar_data |
Man page
Source code
|
| create_assoc_qt_covar_params |
Man page
Source code
|
| create_assoc_qt_data |
Man page
Source code
|
| create_assoc_qt_params |
Man page
Source code
|
| create_bgen_files_for_saige |
Man page
Source code
|
| create_chromosome_selector |
Man page
Source code
|
| create_convert_plink_bin_files_to_plink_text_files_args |
Man page
Source code
|
| create_cov_table_from_data |
Man page
Source code
|
| create_cov_table_from_ped_table |
Man page
Source code
|
| create_custom_plink_options |
Man page
Source code
|
| create_custom_trait |
Man page
Source code
|
| create_demo_assoc_data |
Man page
Source code
|
| create_demo_assoc_qt_covar_data |
Man page
Source code
|
| create_demo_assoc_qt_data |
Man page
Source code
|
| create_demo_map_table |
Man page
Source code
|
| create_demo_ped_table |
Man page
Source code
|
| create_demo_ped_table_lhs |
Man page
Source code
|
| create_demo_ped_table_rhs |
Man page
Source code
|
| create_demo_ped_table_rhs_trait |
Man page
Source code
|
| create_demo_phe_table |
Man page
Source code
|
| create_demo_phe_table_lhs |
Man page
Source code
|
| create_demo_phe_table_rhs |
Man page
Source code
|
| create_demo_traits |
Man page
Source code
|
| create_dominant_trait |
Man page
Source code
|
| create_epistatic_trait |
Man page
Source code
|
| create_keep_args |
Man page
Source code
|
| create_pca_args |
Man page
Source code
|
| create_phe_table_from_data |
Man page
Source code
|
| create_phe_table_from_fam_table |
Man page
Source code
|
| create_phe_table_from_ped_table |
Man page
Source code
|
| create_phe_table_from_plink2_bin_data |
Man page
Source code
|
| create_phe_table_from_plink_bin2_filenames |
Man page
Source code
|
| create_phe_table_from_plink_bin_data |
Man page
Source code
|
| create_phe_table_from_plink_bin_filenames |
Man page
Source code
|
| create_phe_table_from_plink_text_data |
Man page
Source code
|
| create_phe_table_from_plink_text_filenames |
Man page
Source code
|
| create_phe_table_from_psam_table |
Man page
Source code
|
| create_phenotype_data_filename |
Man page
Source code
|
| create_phenotype_data_table |
Man page
Source code
|
| create_phenotype_data_table_from_data |
Man page
Source code
|
| create_plink2_bin_data |
Man page
Source code
|
| create_plink2_bin_filenames |
Man page
Source code
|
| create_plink_bin_data |
Man page
Source code
|
| create_plink_bin_filenames |
Man page
Source code
|
| create_plink_options |
Man page
Source code
|
| create_plink_optionses |
Man page
Source code
|
| create_plink_text_data |
Man page
Source code
|
| create_plink_text_filenames |
Man page
Source code
|
| create_plink_v1_7_options |
Man page
Source code
|
| create_plink_v1_9_options |
Man page
Source code
|
| create_plink_v2_0_options |
Man page
Source code
|
| create_random_case_control_trait |
Man page
Source code
|
| create_random_samples_selector |
Man page
Source code
|
| create_random_snps_selector |
Man page
Source code
|
| create_random_trait |
Man page
Source code
|
| create_rnorm_trait |
Man page
Source code
|
| create_runif_trait |
Man page
Source code
|
| create_samples_selector |
Man page
Source code
|
| create_select_chromosome_args |
Man page
Source code
|
| create_select_random_samples_args |
Man page
Source code
|
| create_select_random_snp_args |
Man page
Source code
|
| create_select_samples_args |
Man page
Source code
|
| create_select_single_sample_args |
Man page
Source code
|
| create_select_single_snp_args |
Man page
Source code
|
| create_select_snp_range_args |
Man page
Source code
|
| create_select_snp_window_args |
Man page
Source code
|
| create_select_snps_args |
Man page
Source code
|
| create_selected_sample_ids |
Man page
Source code
|
| create_simulate_qt_params |
Man page
Source code
|
| create_single_sample_selector |
Man page
Source code
|
| create_single_snp_selector |
Man page
Source code
|
| create_snp_range_selector |
Man page
Source code
|
| create_snp_window_selector |
Man page
Source code
|
| create_snps_selector |
Man page
Source code
|
| create_snvs |
Man page
Source code
|
| create_test_assoc_data |
Man page
Source code
|
| create_test_assoc_params |
Man page
Source code
|
| create_test_assoc_qt_covar_data |
Man page
Source code
|
| create_test_assoc_qt_covar_params |
Man page
Source code
|
| create_test_assoc_qt_data |
Man page
Source code
|
| create_test_assoc_qt_params |
Man page
Source code
|
| create_test_chromosome_selector |
Man page
Source code
|
| create_test_pca_result_filenames |
Man page
Source code
|
| create_test_phenotype_data_filename |
Man page
Source code
|
| create_test_phenotype_data_table |
Man page
Source code
|
| create_test_plink2_bin_data |
Man page
Source code
|
| create_test_plink2_bin_filenames |
Man page
Source code
|
| create_test_plink_bin_data |
Man page
Source code
|
| create_test_plink_bin_filenames |
Man page
Source code
|
| create_test_plink_text_data |
Man page
Source code
|
| create_test_plink_text_filenames |
Man page
Source code
|
| create_test_random_samples_selector |
Man page
Source code
|
| create_test_random_snps_selector |
Man page
Source code
|
| create_test_simulate_qt_params |
Man page
Source code
|
| create_test_single_sample_selector |
Man page
Source code
|
| create_test_single_snp_selector |
Man page
Source code
|
| create_test_snp_range_selector |
Man page
Source code
|
| create_test_snp_window_selector |
Man page
Source code
|
| create_trait |
Man page
Source code
|
| default_params_doc |
Man page
Source code
|
| do_plink_self_test |
Man page
Source code
|
| filter_random_snps |
Man page
Source code
|
| freq_from_bfile |
Man page
Source code
|
| freq_from_bfile_within_phe_file |
Man page
Source code
|
| get_data_description |
Man page
Source code
|
| get_default_plink_exe_path |
Man page
Source code
|
| get_default_plink_version |
Man page
Source code
|
| get_heighest_maf |
Man page
Source code
|
| get_lowest_maf |
Man page
Source code
|
| get_marker_correlation_coefficients |
Man page
Source code
|
| get_marker_correlation_coefficients_table |
Man page
Source code
|
| get_minor_alelle_frequencies |
Man page
Source code
|
| get_n_samples |
Man page
Source code
|
| get_n_samples_from_bed_table |
Man page
Source code
|
| get_n_samples_from_bim_table |
Man page
Source code
|
| get_n_samples_from_fam_table |
Man page
Source code
|
| get_n_samples_from_map_table |
Man page
Source code
|
| get_n_samples_from_ped_table |
Man page
Source code
|
| get_n_samples_from_pgen_table |
Man page
Source code
|
| get_n_samples_from_psam_table |
Man page
Source code
|
| get_n_samples_from_pvar_table |
Man page
Source code
|
| get_n_snps |
Man page
Source code
|
| get_n_snps_from_bed_table |
Man page
Source code
|
| get_n_snps_from_bim_table |
Man page
Source code
|
| get_n_snps_from_map_table |
Man page
Source code
|
| get_n_snps_from_ped_table |
Man page
Source code
|
| get_n_snps_from_pgen_table |
Man page
Source code
|
| get_n_snps_from_pvar_table |
Man page
Source code
|
| get_os |
Man page
Source code
|
| get_phenotypes |
Man page
Source code
|
| get_plink1_versions |
Man page
Source code
|
| get_plink2_versions |
Man page
Source code
|
| get_plink_download_url |
Man page
Source code
|
| get_plink_download_url_linux |
Man page
Source code
|
| get_plink_download_url_mac |
Man page
Source code
|
| get_plink_download_url_win |
Man page
Source code
|
| get_plink_example_filename |
Man page
Source code
|
| get_plink_example_filenames |
Man page
Source code
|
| get_plink_exe_name |
Man page
Source code
|
| get_plink_folder |
Man page
Source code
|
| get_plink_help_text |
Man page
Source code
|
| get_plink_subfolder_name |
Man page
Source code
|
| get_plink_tutorial_data_filenames |
Man page
Source code
|
| get_plink_version |
Man page
Source code
|
| get_plink_versions |
Man page
Source code
|
| get_plink_zip_path |
Man page
Source code
|
| get_plinkr_filename |
Man page
Source code
|
| get_plinkr_filenames |
Man page
Source code
|
| get_plinkr_folder |
Man page
Source code
|
| get_plinkr_tempfilename |
Man page
Source code
|
| get_sample_ids_from_fam_file |
Man page
Source code
|
| get_sample_ids_from_fam_table |
Man page
Source code
|
| get_sample_ids_from_phe_file |
Man page
Source code
|
| get_sample_ids_from_phe_table |
Man page
Source code
|
| get_test_bed_table |
Man page
Source code
|
| get_test_bim_table |
Man page
Source code
|
| get_test_eigenval_table |
Man page
Source code
|
| get_test_eigenvec_table |
Man page
Source code
|
| get_test_fam_table |
Man page
Source code
|
| get_test_map_table |
Man page
Source code
|
| get_test_ped_table |
Man page
Source code
|
| get_test_pgen_table |
Man page
Source code
|
| get_test_phe_table |
Man page
Source code
|
| get_test_psam_table |
Man page
Source code
|
| get_test_pvar_table |
Man page
Source code
|
| get_test_sample_ids |
Man page
Source code
|
| has_bed_table_attributes |
Man page
Source code
|
| has_pgen_table_attributes |
Man page
Source code
|
| has_plink2_bin_files |
Man page
Source code
|
| has_plink_bin_files |
Man page
Source code
|
| has_plink_text_files |
Man page
Source code
|
| install_plink |
Man page
Source code
|
| install_plink_tutorial_data |
Man page
Source code
|
| install_plinks |
Man page
Source code
|
| is_assoc_qt_data |
Man page
Source code
|
| is_bed_table |
Man page
Source code
|
| is_bim_table |
Man page
Source code
|
| is_chromosome_selector |
Man page
Source code
|
| is_data |
Man page
Source code
|
| is_exe |
Man page
Source code
|
| is_fam_table |
Man page
Source code
|
| is_map_table |
Man page
Source code
|
| is_marees_et_al_data_installed |
Man page
Source code
|
| is_on_appveyor |
Man page
Source code
|
| is_on_ci |
Man page
Source code
|
| is_on_github_actions |
Man page
Source code
|
| is_on_travis |
Man page
Source code
|
| is_one_trait |
Man page
Source code
|
| is_ped_table |
Man page
Source code
|
| is_pgen_table |
Man page
Source code
|
| is_phenotype_data_filename |
Man page
Source code
|
| is_phenotype_data_table |
Man page
Source code
|
| is_plink2_bin_data |
Man page
Source code
|
| is_plink2_bin_filenames |
Man page
Source code
|
| is_plink_bin_data |
Man page
Source code
|
| is_plink_bin_filenames |
Man page
Source code
|
| is_plink_installed |
Man page
Source code
|
| is_plink_text_data |
Man page
Source code
|
| is_plink_text_filenames |
Man page
Source code
|
| is_plink_tutorial_data_installed |
Man page
Source code
|
| is_psam_table |
Man page
Source code
|
| is_pvar_table |
Man page
Source code
|
| is_random_samples_selector |
Man page
Source code
|
| is_random_snps_selector |
Man page
Source code
|
| is_sample_selector |
Man page
Source code
|
| is_single_sample_selector |
Man page
Source code
|
| is_single_snp_selector |
Man page
Source code
|
| is_snp_range_selector |
Man page
Source code
|
| is_snp_selector |
Man page
Source code
|
| is_snp_window_selector |
Man page
Source code
|
| keep |
Man page
Source code
|
| make_bed |
Man page
Source code
|
| make_bed_with_plink |
Man page
Source code
|
| make_bed_with_plink2 |
Man page
Source code
|
| make_pgen |
Man page
Source code
|
| missing_from_bfile |
Man page
Source code
|
| pca |
Man page
Source code
|
| plink2_assoc |
Man page
Source code
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| plink2_assoc_on_plink2_bin_data |
Man page
Source code
|
| plink2_assoc_on_plink2_bin_files |
Man page
Source code
|
| plink_assoc |
Man page
Source code
|
| plinkr |
Man page
|
| plinkr_report |
Man page
Source code
|
| plot_pca_results |
Man page
Source code
|
| read_plink2_bin_data |
Man page
Source code
|
| read_plink2_pgen_file |
Man page
Source code
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| read_plink2_pgen_file_from_files |
Man page
Source code
|
| read_plink2_psam_file |
Man page
Source code
|
| read_plink2_pvar_file |
Man page
Source code
|
| read_plink2_qassoc_file |
Man page
Source code
|
| read_plink2_qassoc_files |
Man page
Source code
|
| read_plink_assoc_adjusted_file |
Man page
Source code
|
| read_plink_assoc_file |
Man page
Source code
|
| read_plink_bed_file |
Man page
Source code
|
| read_plink_bed_file_from_files |
Man page
Source code
|
| read_plink_bim_file |
Man page
Source code
|
| read_plink_bin_data |
Man page
Source code
|
| read_plink_cov_file |
Man page
Source code
|
| read_plink_eigenval_file |
Man page
Source code
|
| read_plink_eigenvec_file |
Man page
Source code
|
| read_plink_fam_file |
Man page
Source code
|
| read_plink_frq_file |
Man page
Source code
|
| read_plink_frq_strat_file |
Man page
Source code
|
| read_plink_imiss_file |
Man page
Source code
|
| read_plink_ld_file |
Man page
Source code
|
| read_plink_lmiss_file |
Man page
Source code
|
| read_plink_log_file |
Man page
Source code
|
| read_plink_map_file |
Man page
Source code
|
| read_plink_ped_file |
Man page
Source code
|
| read_plink_phe_file |
Man page
Source code
|
| read_plink_qassoc_file |
Man page
Source code
|
| read_plink_qassoc_files |
Man page
Source code
|
| read_plink_simfreq_file |
Man page
Source code
|
| read_plink_text_data |
Man page
Source code
|
| rename_fids |
Man page
Source code
|
| rename_iids |
Man page
Source code
|
| run_plink |
Man page
Source code
|
| save_bed_table |
Man page
Source code
|
| save_bim_table |
Man page
Source code
|
| save_cov_table |
Man page
Source code
|
| save_fam_table |
Man page
Source code
|
| save_map_table |
Man page
Source code
|
| save_ped_table |
Man page
Source code
|
| save_pgen_table |
Man page
Source code
|
| save_phe_table |
Man page
Source code
|
| save_phenotype_data_table |
Man page
Source code
|
| save_plink2_bin_data |
Man page
Source code
|
| save_plink_bin_data |
Man page
Source code
|
| save_plink_text_data |
Man page
Source code
|
| save_psam_table |
Man page
Source code
|
| save_pvar_table |
Man page
Source code
|
| save_qassoc_table |
Man page
Source code
|
| save_sample_ids |
Man page
Source code
|
| save_simulate_qt_params |
Man page
Source code
|
| select_samples |
Man page
Source code
|
| select_snps |
Man page
Source code
|
| simulate_qt |
Man page
Source code
|
| uninstall_plink |
Man page
Source code
|
| uninstall_plink_tutorial_data |
Man page
Source code
|
| uninstall_plinks |
Man page
Source code
|
