API for microresearcher/MicroVis
Microbiome Analysis and Visualization

Global functions
%>%	Man page
.get_lower_tri	Source code
.get_upper_tri	Source code
.hc_cormat_order	Source code
.no_panel	Source code
.remove_diag	Source code
.tibble_to_matrix	Source code
ASVtoTaxa	Man page Source code
C_from_V	Source code
TaxatoASV	Man page Source code
activate	Man page Source code
addGrps	Man page Source code
addSamples	Man page Source code
adiv	Man page Source code
agglomTaxa	Man page Source code
autonametoggle	Man page Source code
av	Source code
basis_cov	Source code
basis_var	Source code
bdiv	Man page Source code
calcUniVar	Man page Source code
capitalize	Man page Source code
cclasso	Source code
cclasso.sub	Source code
changeFactor	Man page Source code
changerank	Man page Source code
checkColors	Man page Source code
checkFormula	Man page Source code
checkGroups	Man page Source code
chooseFactors	Man page Source code
chooseGrps	Man page Source code
chooseSamples	Man page Source code
cleanASVs	Man page Source code
cleanData	Man page Source code
cleanGroups	Man page Source code
cleanUnkTaxa	Man page Source code
clearFeatureFilt	Man page Source code
clearNormalization	Man page Source code
clearProcessing	Man page Source code
clr	Man page Source code
clr.data.frame	Man page Source code
clr.default	Man page Source code
clr.matrix	Man page Source code
clusterSamples	Man page Source code
colorGrps	Man page Source code
combineDupeASVs	Man page Source code
cor2cov	Man page Source code
countFeatures	Man page Source code
countSamples	Man page Source code
countSamples.base	Man page Source code
excludeFeatures	Man page Source code
exclude_pairs	Source code
filterLowAbun	Man page Source code
filterLowPrev	Man page Source code
filterLowRelAbun	Man page Source code
filterLowTotAbun	Man page Source code
filterLowVar	Man page Source code
filterNAs	Man page Source code
findSigFisher	Man page Source code
foldChange	Man page Source code
ftRatio	Man page Source code
ftRatiostab	Man page Source code
ftcor	Man page Source code
getDiscriminatingFeatures	Man page Source code
getFeatures	Man page Source code
getFormulaVars	Man page Source code
getFtStats	Man page Source code
getLowestRank	Man page Source code
getNetwork	Man page Source code
getParentTaxa	Man page Source code
getRanks	Man page Source code
getSamples	Man page Source code
getdata	Man page Source code
ggcorrplot	Man page Source code
glog	Man page Source code
keepSigFisher	Man page Source code
listUniques	Man page Source code
listsigs	Man page Source code
loadFxnlFile	Man page Source code
loadMDFile	Man page Source code
loadTaxaFile	Man page Source code
makeASVtab	Man page Source code
makeAldex	Man page Source code
makeDeseq	Man page Source code
makePS	Man page Source code
makeRankTabs	Man page Source code
makeTaxMap	Man page Source code
multisave	Man page Source code
mvCClasso	Man page Source code
mvLMEM	Man page Source code
mvNetwork	Man page Source code
mvaldex	Man page Source code
mvcombine	Man page Source code
mvdeseq	Man page Source code
mvdist	Man page Source code
mvhelp	Man page Source code
mvlefse	Man page Source code
mvload	Man page Source code
mvmelt	Man page Source code
mvmerge	Man page Source code
mvsave	Man page Source code
mvstratify	Man page Source code
mvunifrac	Man page Source code
nameAnalysis	Man page Source code
nameStratification	Man page Source code
networkClusters	Man page Source code
norm_diric	Source code
norm_to_total	Man page Source code
normalizeTable	Man page Source code
normalizer	Man page Source code
orderGroups	Man page Source code
pairedCor	Man page Source code
parseStratifiers	Man page Source code
phyloDiversity	Man page Source code
plotAlphaDiv	Man page Source code
plotBetaDiv	Man page Source code
plotClad	Man page Source code
plotDeseq	Man page Source code
plotFeatureDensity	Man page Source code
plotFtCorlines	Man page Source code
plotFtCormat	Man page Source code
plotGroupedBars	Man page Source code
plotHeatTree	Man page Source code
plotHeatmap	Man page Source code
plotLEFSE	Man page Source code
plotLMEM	Man page Source code
plotNetwork	Man page Source code
plotPairedCor	Man page Source code
plotRFImp	Man page Source code
plotRareCurves	Man page Source code
plotSampleDensity	Man page Source code
plotSimilarity	Man page Source code
plotStackedBars	Man page Source code
plotUnivar	Man page Source code
pnova	Man page Source code
poolGroups	Man page Source code
posthoctoggle	Man page Source code
print.mvdata	Man page Source code
print.mvmerged	Man page Source code
processDataset	Man page Source code
pval.sparccboot	Man page Source code
rangetotext	Man page Source code
rarefySamples	Man page Source code
readdepth	Man page Source code
removeGrps	Man page Source code
removeLowQuality	Man page Source code
removePool	Man page Source code
removeSamples	Man page Source code
resetResDir	Man page Source code
rfboruta	Man page Source code
runFeatureFilter	Man page Source code
runFeatureRemover	Man page Source code
runNormalization	Man page Source code
runRarefaction	Man page Source code
runSampleFilter	Man page Source code
sampleFreq	Man page Source code
samplesWith	Man page Source code
saveResults	Man page Source code
savetoggle	Man page Source code
scaleFeatures	Man page Source code
scaleSamples	Man page Source code
selectFeatures	Man page Source code
setFVar	Man page Source code
sliceCormats	Man page Source code
sparcc	Man page Source code
sparccboot	Man page Source code
sparccinner	Source code
summarizeTaxa	Man page Source code
templateFunction	Source code
theme_mv	Man page Source code
transData	Man page Source code
univar	Man page Source code
unselectFeatures	Man page Source code
validFactor	Man page Source code
viewactive	Man page Source code
viewstats	Man page Source code
viewtable	Man page Source code
zeroReplace	Man page Source code
zerostoggle	Man page Source code