Files in aqp

Algorithms for Quantitative Pedology

NEWS.md R/addBracket.R R/SoilProfileCollection-coercion.R R/bootstrapSoilTexture.R R/alignTransect.R R/SoilProfileCollection-slice-methods.R R/textureTriangleSummary.R R/huePosition.R R/slab.R R/color-palettes.R R/munsell2rgb.R R/collapseHz.R R/hzTransitionProbabilities.R R/allocate.R R/segment.R R/invertLabelColor.R R/datadots.R R/SoilProfileCollection-integrity.R R/unroll.R R/mutate_profile.R R/NCSP.R R/getLastHorizonID.R R/mostLikelyHzSequence.R R/groupSPC.R R/guessColumnNames.R R/duplicate.R R/accumulateDepths.R R/estimatePSCS.R R/repairMissingHzDepths.R R/random_profile.R R/getClosestMunsellChip.R R/SoilProfileCollection-methods.R R/plotMultipleSPC.R R/reaction.R R/combine.R R/mixMunsell.R R/harmonize.R R/transform.R R/compositeSPC.R R/split.R R/depthOf.R R/splitLogicErrors.R R/aqp-label-placement-solvers.R R/colorContrastPlot.R R/depthWeights.R R/spec2Munsell.R R/generalize.hz.R R/plotColorMixture.R R/previewColors.R R/slab-utils.R R/compareSites.R R/getSoilDepthClass.R R/SoilProfileCollection-metadata.R R/soilColorIndices.R R/glomApply.R R/colorQuantiles.R R/sketch-utils.R R/col2Munsell.R R/SoilProfileCollection-spatial.R R/estimateSoilDepth.R R/accuracy_uncertainty.R R/estimateSoilColor.R R/denormalize.R R/evalMissingData.R R/fillHzGaps.R R/get.ml.hz.R R/prepanel.depth_function.R R/aqp-package.R R/equivalentMunsellChips.R R/fragmentClasses.R R/soilPalette.R R/colorContrast.R R/enforce_df_class.R R/profile_compare.R R/SoilProfileCollection-iterators.R R/groupedProfilePlot.R R/flagOverlappingHz.R R/lunique.R R/glom.R R/slab2SPC.R R/HzDepthLogicSubset.R R/mollicEpipedon.R R/warpHorizons.R R/panel.depth_function.R R/getArgillicBounds.R R/dice.R R/factor-level-setters.R R/profileInformationIndex.R R/getSurfaceHorizonDepth.R R/get.increase.matrix.R R/aggregateColor.R R/aggregateSoilDepth.R R/colorChart.R R/hzOffset.R R/plotSPC.R R/thicknessOf.R R/slicedHSD.R R/contrastClass.R R/missingDataGrid.R R/explainPlotSPC.R R/fragmentSieve.R R/zzz.R R/AAAA.R R/rebuildSPC.R R/L1_profiles.R R/perturb.R R/addVolumeFraction.R R/evalGenHz.R R/checkHzDepthLogic.R R/spc2mpspline.R R/SoilProfileCollection-setters.R R/Class-SoilProfileCollection.R R/summarize.R R/data-documentation.R R/contrastChart.R R/soilColorSignature.R R/plot_distance_graph.R R/getCambicBounds.R R/quickSPC.R R/parseMunsell.R R/guessGenHzLevels.R R/SoilProfileCollection-operators.R R/checkSPC.R R/texture.R R/sim.R R/reduce.R R/estimateAWC.R R/simulateColor.R R/huePositionCircle.R R/hzBoundary.R R/tauW.R inst/doc/new-in-aqp-2.Rmd inst/doc/NCSP.R inst/doc/Introduction-to-SoilProfileCollection-Objects.Rmd inst/doc/missing-data.Rmd inst/doc/Munsell-color-conversion.R inst/doc/missing-data.R inst/doc/aqp-overview.Rmd inst/doc/new-in-aqp-2.R inst/doc/Introduction-to-SoilProfileCollection-Objects.R inst/doc/label-placement.R inst/doc/Munsell-color-conversion.Rmd inst/doc/aqp-overview.R inst/doc/NCSP.Rmd inst/doc/label-placement.Rmd demo/slope_effect_hz_thickness.R demo/aqp.R tests/testthat.R tests/testthat/test-harmonize.R tests/testthat/test-genhz.R tests/testthat/test-segment.R tests/testthat/test-equivalentMunsellChips.R tests/testthat/test-guessColumnNames.R tests/testthat/test-plotSPC.R tests/testthat/test-mollic.R tests/testthat/test-texture.R tests/testthat/test-color-signature.R tests/testthat/test-SoilProfileCollection-metadata.R tests/testthat/test-alignTransect.R tests/testthat/test-flagOverlappingHz.R tests/testthat/test-hzBoundary.R tests/testthat/test-NCSP.R tests/testthat/test-missingDataGrid.R tests/testthat/test-fix-find-overlap.R tests/testthat/test-profileInformationIndex.R tests/testthat/test-split.R tests/testthat/test-textureTriangleSummary.R tests/testthat/test-groupSPC.R tests/testthat/test-argillic.R tests/testthat/test-colorIndices.R tests/testthat/test-spec2Munsell.R tests/testthat/test-huePosition.R tests/testthat/test-slabPlot.R tests/testthat/test-estimateSoilColor.R tests/testthat/test-SPC-objects.R tests/testthat/test-profileApply.R tests/testthat/test-mutate_profile.R tests/testthat/test-duplicate.R tests/testthat/test-invertLabelColor.R tests/testthat/test-SPC-combine.R tests/testthat/test-glom.R tests/testthat/test-reduceSPC.R tests/testthat/test-SPC-k-keywords.R tests/testthat/test-SoilProfileCollection-setters.R tests/testthat/test-evalMissingData.R tests/testthat/test-color-conversion.R tests/testthat/test-aggregateColor.R tests/testthat/test-cambic.R tests/testthat/test-aqp.R tests/testthat/test-surface-thickness.R tests/testthat/test-L1_profiles.R tests/testthat/test-DT-tbl.R tests/testthat/test-accumulateDepths.R tests/testthat/test-estimateAWC.R tests/testthat/test-checkHzDepthLogic.R tests/testthat/test-getLastHorizonID.R tests/testthat/Rplots.pdf tests/testthat/test-mixMunsell.R tests/testthat/test-fillHzGaps.R tests/testthat/test-simulateColor.R tests/testthat/test-repairMissingHzDepths.R tests/testthat/test-collapseHz.R tests/testthat/test-quickSPC.R tests/testthat/test-dice.R tests/testthat/test-soil-depth.R tests/testthat/test-genSlabLabels.R tests/testthat/test-estimatePSCS.R tests/testthat/test-hzOffset.R tests/testthat/test-colorContrast.R tests/testthat/test-slab.R tests/testthat/test-fragmentSieve.R tests/testthat/test-spc2mpspline.R tests/testthat/test-bootstrapSoilTexture.R tests/testthat/test-perturb.R tests/testthat/test-thicknessOf.R tests/testthat/test-denormalize.R tests/testthat/test-colorQuantiles.R tests/testthat/test-estimateSoilDepth.R tests/testthat/test-subsetHz.R tests/testthat/test-lunique.R tests/testthat/test-reaction.R tests/testthat/test-aggregateSoilDepth.R tests/testthat/test-acc-unc.R tests/testthat/test-profile_compare.R vignettes/new-in-aqp-2.Rmd vignettes/Introduction-to-SoilProfileCollection-Objects.Rmd vignettes/missing-data.Rmd vignettes/aqp-overview.Rmd vignettes/Munsell-color-conversion.Rmd vignettes/NCSP.Rmd vignettes/label-placement.Rmd man/hzmetaname.Rd man/fixOverlap.Rd man/sp4.Rd man/hzTransitionProbabilities.Rd man/horizons.Rd man/profile_id.Rd man/thicknessOf.Rd man/soilColorSignature.Rd man/length.Rd man/hzMetadata.Rd man/isEmpty.Rd man/horizonDepths.Rd man/duplicate.Rd man/grepSPC.Rd man/doublebracket-set.Rd man/lunique.Rd man/alignTransect.Rd man/sierraTransect.Rd man/profile_compare.Rd man/pbindlist.Rd man/equivalentMunsellChips.Rd man/combine-SoilProfileCollection-method.Rd man/SoilTextureLevels.Rd man/plotMultipleSPC.Rd man/jacobs2000.Rd man/validSpatialData.Rd man/shannonEntropy.Rd man/missingDataGrid.Rd man/hzDepthTests.Rd man/depths.Rd man/spectral.reference.Rd man/addVolumeFraction.Rd man/dollarsign.Rd man/hzOffset.Rd man/ca630.Rd man/accumulateDepths.Rd man/electroStatics_1D.Rd man/rgb2munsell.Rd man/horizonColorIndices.Rd man/barron.torrent.redness.LAB.Rd man/buntley.westin.index.Rd man/hzDistinctnessCodeToOffset.Rd man/checkSPC.Rd man/slab.Rd man/aggregateColor.Rd man/evalGenHZ.Rd man/simulateColor.Rd man/summarizeSPC.Rd man/allocate.Rd man/unique.Rd man/HzDepthLogicSubset.Rd man/spec2Munsell.Rd man/subApply.Rd man/colorChart.Rd man/spc2mpspline-SoilProfileCollection-method.Rd man/wilson2022.Rd man/get.ml.hz.Rd man/siteNames.Rd man/reorderHorizons.Rd man/singlebracket.Rd man/collapseHz.Rd man/profileGroupLabels.Rd man/colorQuantiles.Rd man/profileApply.Rd man/perturb.Rd man/brierScore.Rd man/NCSP.Rd man/invertLabelColor.Rd man/texture.Rd man/aqp_df_class.Rd man/mutate_profile.Rd man/glomApply.Rd man/hzDesgn.Rd man/SoilProfileCollection-plotting-methods.Rd man/us.state.soils.Rd man/mixMunsell.Rd man/initSpatial.Rd man/estimatePSCS.Rd man/sp6.Rd man/warpHorizons.Rd man/crit.clay.argillic.Rd man/parseMunsell.Rd man/huePosition.Rd man/checkHzDepthLogic.Rd man/evalMissingData.Rd man/osd.Rd man/colorContrastPlot.Rd man/colorContrast.Rd man/spc_in_sync.Rd man/transform.Rd man/equivalent_munsell.Rd man/compareSites.Rd man/hztexclname.Rd man/metadata.Rd man/estimateSoilColor.Rd man/L1_profiles.Rd man/confusionIndex.Rd man/sp3.Rd man/munsellHuePosition.Rd man/unroll.Rd man/hz_lag.Rd man/getSoilDepthClass.Rd man/sp1.Rd man/lookup_taxpartsize.Rd man/flagOverlappingHz.Rd man/contrastClass.Rd man/soilPalette.Rd man/mollic.thickness.requirement.Rd man/guessHzAttrName.Rd man/horizonNames.Rd man/explainPlotSPC.Rd man/aggregateSoilDepth.Rd man/col2Munsell.Rd man/getClosestMunsellChip.Rd man/hzdesgnname.Rd man/correctAWC.Rd man/restrictions.Rd man/profileInformationIndex.Rd man/plotColorMixture.Rd man/depthOf.Rd man/previewColors.Rd man/slicedHSD.Rd man/getLastHorizonID.Rd man/sp2.Rd man/hz_to_taxpartsize.Rd man/rowley2019.Rd man/thompson.bell.darkness.Rd man/hz_segment.Rd man/hzTopographyCodeToLineType.Rd man/hzTopographyCodeToOffset.Rd man/soiltexture.Rd man/overlapMetrics.Rd man/panel.depth_function.Rd man/get.increase.matrix.Rd man/subset-SoilProfileCollection-method.Rd man/depth_units.Rd man/generalize.hz.Rd man/addBracket.Rd man/names.Rd man/fillHzGaps.Rd man/bootstrapSoilTexture.Rd man/site.Rd man/munsell.Rd man/hurst.redness.Rd man/min.Rd man/estimateAWC.Rd man/glom.Rd man/genSlabLabels.Rd man/replaceHorizons.Rd man/xtableTauW.Rd man/slice.Rd man/soilTextureColorPal.Rd man/hasDarkColors.Rd man/harmonize-SoilProfileCollection-method.Rd man/SANN_1D.Rd man/reduceSPC.Rd man/rebuildSPC.Rd man/idname.Rd man/quickSPC.Rd man/doublebracket.Rd man/diagnostic_hz.Rd man/plotColorQuantiles.Rd man/coercion-methods.Rd man/denormalize.Rd man/sp5.Rd man/GHL.Rd man/hz_intersect.Rd man/groupSPC.Rd man/aqp-package.Rd man/reactionclass.Rd man/compositeSPC.Rd man/SoilProfileCollection-class.Rd man/subsetProfiles.Rd man/huePositionCircle.Rd man/split-SoilProfileCollection-method.Rd man/soil_minerals.Rd man/sim.Rd man/hzID.Rd man/genhzTableToAdjMat.Rd man/munsell2rgb.Rd man/harden.rubification.Rd man/getCambicBounds.Rd man/repairMissingHzDepths.Rd man/show.Rd man/traditionalColorNames.Rd man/subsetHz-SoilProfileCollection-method.Rd man/fragmentClasses.Rd man/contrastChart.Rd man/estimateSoilDepth.Rd man/depthWeights.Rd man/SPC.with.overlap.Rd man/hzidname.Rd man/textureTriangleSummary.Rd man/ROSETTA.centroids.Rd man/addDiagnosticBracket.Rd man/guessGenHzLevels.Rd man/argillic.clay.increase.depth.Rd man/fragmentSieve.Rd man/getArgillicBounds.Rd man/nrow.Rd man/getSurfaceHorizonDepth.Rd man/dollarsign-set.Rd man/plot_distance_graph.Rd man/reaction.Rd man/munsell.spectra.Rd man/harden.melanization.Rd man/random_profile.Rd man/hz_dissolve.Rd man/tauW.Rd man/SoilProfileCollection-crs.Rd man/max.Rd man/splitLogicErrors.Rd man/dice-SoilProfileCollection-method.Rd man/groupedProfilePlot.Rd man/munsell2spc-SoilProfileCollection-method.Rd