xia-lab/MetaboAnalystR
An R Package for Comprehensive Analysis of Metabolomics Data

Package index
Search the xia-lab/MetaboAnalystR package
Vignettes
Functions
2016
Source code
98
Man pages
553
Home
/
GitHub
/
xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data
/
API

API for xia-lab/MetaboAnalystR
An R Package for Comprehensive Analysis of Metabolomics Data

Global functions
.calculate.pls.vip Source code
.calculateDistSig Source code
.compute.mummichog.RT.fgsea Source code
.compute.mummichog.fgsea Source code
.compute.mummichogRTSigPvals Source code
.compute.mummichogSigPvals Source code
.computeEmpiricalFilterCutoff Source code
.do.CVTest.LRmodel Man page Source code
.do.api.call Source code
.errorF Source code
.estimateDP Source code
.estimatesCorrect Source code
.format_mzmine_pktable Source code
.get.ftest.res Source code
.get.mSet Source code
.get.max.allow Source code
.get.my.lib Man page Source code
.get.rdt.set Source code
.get.sqlite.con Source code Source code
.get.ttest.res Source code
.getDataPath Source code
.getDynLoadPath Source code
.get_statement Source code
.graph.eda Source code
.graph.noa Source code
.graph.sif Source code
.heckbert.nicenum Source code
.init.MummiMSet Source code
.init.Permutations Source code
.init.RT.Permutations Source code
.init.global.vars Source code
.load.enrich.compound.lib Source code
.load.enrich.lib Source code
.load.scripts.on.demand Source code
.mr_forestPlot Source code
.mr_funnelPlot Source code
.mr_looPlot Source code
.mr_scatterPlot Source code
.my.slowreaders Source code
.parse_snp2met Source code
.parse_snp2met_exposure Source code
.perform.computing Source code
.perform.fast.univ.tests Source code
.perform.mummichogPermutations Source code
.perform.mummichogRTPermutations Source code
.performIntegGlobalMergeP Source code
.performIntegPathMergeP Source code
.performPathEnrich Source code
.performWeightedZtest Source code
.permanova_pairwise Source code
.plotIntegGlobalMergeP Source code
.prepare.ebam.cmpd Source code
.prepare.ebam.init Source code
.prepare.globaltest.score Source code
.prepare.oplsda.permut Source code
.prepare.oplsr.anal Source code
.prepare.qea.score Source code
.prepare.sam.anal Source code
.prepare.sam.cmpd Source code
.prepare.splsr.anal Source code
.preparePhenoListSeeds Source code
.query.sqlite Source code
.query_mr_results Source code
.query_mr_sensitivity Source code
.query_mr_single Source code
.readDataTable Man page Source code
.replace.by.lod Source code
.rt.included Source code
.save.ebam.init Source code
.save.globaltest.score Source code
.save.mummichog.restable Source code
.save.oplsda.permut Source code
.save.oplsr.anal Source code
.save.qea.score Source code
.save.sam.anal Source code
.save.splsr.anal Source code
.search.compoundLib Source code
.search.compoundLibMeta Source code
.search_MS2compoundLib Source code
.set.mSet Source code
.set.rdt.set Source code
.setup.psea.library Source code
.similarityF Source code
.sync.data.metadata Source code
.update.feature.nm Source code
ANCOVA Source code
ANOVA.Anal Man page Source code
ANOVA2.Anal Man page Source code
ASCAfun.res Man page Source code
ASCAfun1 Man page
ASCAfun2 Man page
AddDoseFeatureToReport Source code
AddEntryExposure Source code
AddErrMsg Man page Source code
AddFeatureToReport Source code
AddMsg Source code
AdductMapping Source code
AutoNorm Source code
AverageRTfrac Source code
AverageRTtol Source code
C_imodwt_r Source code
C_modwt_r Source code
CacheQSClean Source code
Calculate.ANOVA.posthoc Source code
CalculateCircleInfo Source code
CalculateEffectSize Source code
CalculateFeatureRanking Man page Source code
CalculateGlobalTestScore Man page Source code
CalculateHyperScore Man page Source code
CalculateImpVarCutoff Man page Source code
CalculateOraScore Man page Source code
CalculatePairwiseDiff Man page Source code
CalculateQeaScore Man page Source code
CalculateSSP Man page Source code
CentroidCheck Man page Source code
Check.entry.pls Source code
Check.entry.single Source code
CheckAllRT Source code
CheckMetaDataConsistency Man page Source code
CleanData Man page Source code
CleanDataMatrix Man page Source code
CleanDataObjects Source code
CleanLipidNames Source code
CleanNames Source code
CleanNumber Man page Source code
ClearNumerics Source code
ClearStrings Man page Source code
CombineFacScatter.Anal Source code
CompNorm Source code
Compound_function_mzlist Source code
ComputeAverageCurve Man page Source code
ComputeColorGradient Source code
ComputeCorrP Source code
ComputeDSPC Source code
ComputeDoseLimmaResTable Source code
ComputeEncasing Source code
ComputeHighLow Man page Source code
ComputeKmeanClusters Source code
ComputeMummichogPermPvals Source code
ComputeMummichogRTPermPvals Source code
ComputePathHeatmap Source code
ComputePathHeatmapList Source code
ComputePathHeatmapTable Source code
ComputeSubnetStats Source code
ContainInfiniteTT Source code
ContainInfiniteVolcano Source code
ContainMissing Man page Source code
ContainNewSamples Source code
Convert2AnalObject Man page Source code
Convert2Dictionary Source code
Convert2Mummichog Man page Source code
Convert2MummichogMetaPath Man page Source code
CovariateScatter.Anal Man page Source code
CreateANOVAdoc Man page Source code
CreateAOV2doc Man page Source code
CreateASCAdoc Man page Source code
CreateAnalNullMsg Man page Source code
CreateBPI Source code
CreateBiomarkerInputDoc Man page Source code
CreateBiomarkerIntr Man page Source code
CreateBiomarkerOverview Man page Source code
CreateBiomarkerRatioOverview Man page Source code
CreateBiomarkerRnwReport Man page Source code
CreateCorAnalysis Man page Source code
CreateCorHeatmap Man page Source code
CreateCorrDoc Man page Source code
CreateCovAdj Man page Source code
CreateEBAMdoc Man page Source code
CreateEnrichAnalDoc Man page Source code
CreateEnrichInputDoc Man page Source code
CreateEnrichIntr Man page Source code
CreateEnrichORAdoc Man page Source code
CreateEnrichOverview Man page Source code
CreateEnrichProcessDoc Man page Source code
CreateEnrichQEAdoc Man page Source code
CreateEnrichRnwReport Man page Source code
CreateEnrichSSPdoc Man page Source code
CreateFeatureSum Source code
CreateFooter Man page Source code
CreateGSEAAnalTable Man page Source code Source code
CreateGraph Man page Source code
CreateHCdoc Man page Source code
CreateHeader Source code
CreateHeatmapJson Source code
CreateIntegMatchingTable Man page Source code
CreateIntegPathwayAnalysisRnwReport Man page Source code
CreateIntegratedPathwayAnalInputDoc Man page Source code
CreateIntegratedPathwayAnalIntr Man page Source code
CreateIntegratedPathwayDoc Man page Source code
CreateIntegratedPathwayGeneMapTable Man page Source code
CreateIntegratedPathwayNameMapTable Man page Source code
CreateIntegratedPathwayResultsTable Man page Source code
CreateIntensityStats Source code
CreateKMdoc Man page Source code
CreateLadder Man page Source code
CreateLibFromKEGG Source code
CreateListHeatmapJson Source code
CreateMBdoc Man page Source code
CreateMS2RawRscript Source code
CreateMappingResultTable Man page Source code
CreateMetaAnalTable Man page Source code Source code
CreateMetaAnalysisDEdoc Man page Source code
CreateMetaAnalysisInputDoc Man page Source code
CreateMetaAnalysisIntr Man page Source code
CreateMetaAnalysisNORMdoc Man page Source code
CreateMetaAnalysisOutput Man page Source code
CreateMetaAnalysisOverview Man page Source code
CreateMetaAnalysisRnwReport Man page Source code
CreateMetaMummichogInputDoc Man page Source code
CreateMetaMummichogIntro Man page Source code
CreateMetaMummichogResults Man page Source code
CreateMetaOverview Man page Source code
CreateMetaPathRnwReport Man page Source code
CreateMetaTable Man page Source code
CreateModelBiomarkersDoc Man page Source code
CreateMultiBiomarkersDoc Man page Source code
CreateMummichogAnalTable Man page Source code Source code
CreateMummichogAnalysisDoc Man page Source code Source code
CreateMummichogInputDoc Man page Source code Source code
CreateMummichogIntro Man page Source code Source code
CreateMummichogLibs Man page Source code
CreateMummichogMetaAnalPathTable Man page Source code
CreateMummichogMetaAnalReport Man page Source code
CreateMummichogOverview Man page Source code Source code
CreateMummichogRnwReport Man page Source code
CreateNORMdoc Man page Source code
CreateNetworkExplorerDoc Man page Source code
CreateNetworkExplorerInputDoc Man page Source code
CreateNetworkExplorerIntr Man page Source code
CreateNetworkExplorerOverview Man page Source code
CreateNetworkExplorerRnwReport Man page Source code
CreateNetworkGeneMapTable Man page Source code
CreateNetworkNameMapTable Man page Source code
CreateOPLSDAdoc Man page Source code
CreatePCA Source code
CreatePCA3D Source code
CreatePCAdoc Man page Source code
CreatePLSdoc Man page Source code
CreatePathAnalDoc Man page Source code
CreatePathInputDoc Man page Source code
CreatePathIntr Man page Source code
CreatePathProcessDoc Man page Source code
CreatePathResultDoc Man page Source code
CreatePathRnwReport Man page Source code
CreatePowerAnalDoc Man page Source code
CreatePowerInputDoc Man page Source code
CreatePowerIntr Man page Source code
CreatePowerOverview Man page Source code
CreatePowerParametersDoc Man page Source code
CreatePowerRnwReport Man page Source code
CreateRFdoc Man page Source code
CreateRHistAppendix Man page Source code
CreateROCLabelsTable Man page Source code
CreateRandomForest Man page Source code
CreateRatioTable Man page Source code
CreateRawAnalDetails Source code
CreateRawAnalMethod Source code
CreateRawAnalysisRnwReport Man page Source code
CreateRawAnalyworkflow Source code
CreateRawIntr Source code
CreateRawRscript Source code
CreateRawRscript4Asari Source code
CreateSAMdoc Man page Source code
CreateSOMdoc Man page Source code
CreateSPLSDAdoc Man page Source code
CreateSVMdoc Man page Source code
CreateSampleSum Source code
CreateSemiTransColors Man page Source code
CreateSpectraIOdoc Source code
CreateSpectraInfoTable Source code
CreateStatIOdoc Man page Source code
CreateStatIntr Man page Source code
CreateStatRnwReport Man page Source code
CreateSummaryTable Man page Source code
CreateTIC Source code
CreateTimeSeriesAnalNullMsg Man page Source code
CreateTimeSeriesIOdoc Man page Source code
CreateTimeSeriesRnwReport Man page Source code
CreateUNIVdoc Man page Source code
CreateUnivROCTable Man page Source code
CreateUnivarBiomarkersDoc Man page Source code
CreateVennMetaTable Man page Source code
CreateiPCAdoc Man page Source code
CrossReferencing Man page Source code
CrossReferencingAPI Source code
Customize.MetaAdduct Source code
DGlasso Source code
DataUpdatefromInclusionList Source code
DataUpdatefromInclusionListPro Source code
DecomposeGraph Source code
DefineIntegPvalueMethod Source code
EBAM.Init Man page Source code
ExcludeNodes Source code
ExpandSchema Source code
ExportNetwork Source code
ExtractModule Source code
ExtractNormTable Source code
FC.Anal Man page Source code
FTno2Num Source code
FastRunningShow_auto Source code
FastRunningShow_customized Source code
FeatureCorrelation Man page Source code
FeatureCorrelationMeta Source code
FetchDataSet Source code
FetchExampleMSP Source code
FilterBMDResults Source code
FilterBipartiNet Source code
FilterDRFit Source code
FilterNetByCor Source code
FilterVariable Man page Source code
FindCommunities Source code
Finish.DataSet Source code
FisherLSD Man page Source code
FormatmSet Source code
GenerateParamFile Source code
GeneratePathwayJSON Source code
GeneratePeakList Man page Source code
GenerateTemplates Source code
Get.Accuracy Source code
Get.ConcRef Man page Source code
Get.Fisher Source code
Get.Fstat Source code
Get.Leverage Man page Source code
Get.VIP Man page Source code
Get.asca.leverage Source code
Get.asca.tss Man page Source code
Get.bwss Man page Source code
Get.pAUC Man page Source code
Get.pred Man page Source code
Get.rpart.summary Man page Source code
GetAbundanceLabel Man page Source code
GetAccuracyInfo Man page Source code
GetAdductMsg Source code
GetAllBatchNames Source code
GetAllDataNames Man page Source code
GetAllKMClusterMembers Man page
GetAllPrecMZRTs Source code
GetAllPrecMZs Source code
GetAllSOMClusterMembers Man page
GetAnova2DnMat Source code
GetAnova2UpMat Source code
GetAnovaCmpds Source code
GetAnovaDnMat Source code
GetAnovaSigFileName Source code
GetAnovaUpMat Source code
GetAov2DnIDs Source code
GetAov2SigColNames Source code
GetAov2SigFileName Source code
GetAov2SigMat Source code
GetAov2SigRowNames Source code
GetAov2UpIDs Source code
GetAovDnIDs Source code
GetAovPostHocSig Source code
GetAovSigColNames Source code
GetAovSigMat Source code
GetAovSigNum Source code
GetAovSigRowNames Source code
GetAovUpIDs Source code
GetAscaSigColNames Source code
GetAscaSigFileName Source code
GetAscaSigMat Source code
GetAscaSigRowNames Source code
GetBashFullPath Source code
GetBestModelIndex Source code
GetCIs Man page Source code
GetCMD Man page Source code
GetCanListRowNumber Source code
GetCandidateList Man page Source code
GetCircleInfo Man page Source code
GetColorGradient Source code
GetColorSchema Source code
GetCompoundDetails Man page Source code
GetConvertFullPath Man page Source code
GetCorSigColNames Source code
GetCorSigMat Source code
GetCorSigRowNames Source code
GetCorrSigFileName Source code
GetCountsOfIncludedIons Source code
GetCovDnIDs Source code
GetCovDnMat Source code
GetCovSigColNames Source code
GetCovSigFileName Source code
GetCovSigMat Source code
GetCovSigRowNames Source code
GetCovUpIDs Source code
GetCovUpMat Source code
GetCurrencyMsg Source code
GetCurrentConfMat Source code
GetCurrentConfMatTest Source code
GetCurrentImg Source code
GetCurrentMsg Source code
GetCurrentPathForScheduler Source code
GetDRRes Source code
GetDataDims Source code
GetDefaultPLSCVComp Source code
GetDefaultPLSPairComp Source code
GetDefaultPvalCutoff Source code
GetDefaultRTTol Source code
GetDefaultSPLSCVComp Source code
GetDefaultSPLSPairComp Source code
GetDist3D Source code
GetDoseDEColumns Source code
GetDoseDEMat Source code
GetDoseDERows Source code
GetDoseDnIDs Source code
GetDoseDnMat Source code
GetDoseUnsigIDs Source code
GetDoseUnsigMat Source code
GetDoseUpIDs Source code
GetDoseUpMat Source code
GetDrcFitAllGeneIds Source code
GetDrcFitAllInvStatus Source code
GetDrcFitAllModNms Source code
GetDrcFitAllRes Source code
GetDrcFitAllResColNms Source code
GetEBAMSigColNames Source code
GetEBAMSigMat Source code
GetEBAMSigRowNames Source code
GetEBAMSuggestedA0 Source code
GetECMsg Source code
GetEnrichPieColors Source code
GetEnrichPieHits Source code
GetEnrichPieNames Source code
GetErrMsg Source code
GetExampleDataPath Source code
GetExtendRange Man page Source code
GetFC Man page Source code
GetFCSigColNames Source code
GetFCSigMat Source code
GetFCSigRowNames Source code
GetFcSigDnIDs Source code
GetFcSigDnMat Source code
GetFcSigUpIDs Source code
GetFcSigUpMat Source code
GetFcUnsigIDs Source code
GetFcUnsigMat Source code
GetFeatureNumbers Man page Source code
GetFeatureRankingMat Source code
GetFilesToBeSaved Source code
GetFinalNameMap Man page Source code
GetFisherPvalue Man page Source code
GetFitResultColNames Source code
GetFitResultFeatureIDs Source code
GetFitResultMatrix Source code
GetFitResultModelNms Source code
GetFtestRes Source code
GetFunctionalDetails Source code
GetGeneHitsRowNumber Source code
GetGeneMappingResultTable Source code
GetGroupNames Man page Source code
GetGroupNumber Source code
GetHTMLMetSet Man page Source code
GetHTMLPathSet Man page Source code
GetHeteroRes.mat Source code
GetHeteroRes.rowNames Source code
GetHitsRowNumber Source code
GetImpColNames Source code
GetImpFeatureMat Man page Source code
GetImpHighLow Source code
GetImpRowNames Source code
GetImpValues Source code
GetIncludedPrecMZRTs Source code
GetIncludedPrecMZs Source code
GetIntegHTMLPathSet Source code
GetIntegResultColNames Source code
GetIntegResultMatrix Source code
GetIntegResultPathIDs Source code
GetIntegResultPathNames Source code
GetIsLipids Source code
GetItemSelectData Source code
GetItemSelectDataColNms Source code
GetItemSelectDataMean Source code
GetItemSelectDataMeanColNms Source code
GetItemSelectDataRowNms Source code
GetItemSelectDose Source code
GetItemSelectItems Source code
GetKEGG.PathNames Source code
GetKEGGNodeInfo Man page Source code
GetKMClusterMembers Man page
GetLRConvergence Source code
GetLREquation Source code
GetLR_clsLbl Source code
GetLR_clsLblNew Source code
GetLRmodelTable Source code
GetLRperformTable Source code
GetLRthreshold Source code
GetLassoFreqNames Source code
GetLassoFreqs Man page Source code
GetLimmaResTable Man page Source code
GetMBSigColNames Source code
GetMBSigMat Source code
GetMBSigRowNames Source code
GetMRMat Source code
GetMRMatColNames Source code
GetMRMatRowNames Source code
GetMRRes.mat Source code
GetMRRes.rowNames Source code
GetMSMSCompoundNames_single Source code
GetMSMSDot_single Source code
GetMSMSFeatureLabel Source code
GetMSMSFormulas_single Source code
GetMSMSInchiKeys_single Source code
GetMSMSPrecMZvec_msp Source code
GetMSMSPrecMZvec_msp_min Source code
GetMSMSPrecs_single Source code
GetMSMSSimScores_single Source code
GetMSMSSmiles_single Source code
GetMSPSanityCheckMsg Source code
GetMapTable Man page Source code
GetMatchedCompounds Source code
GetMatchingDetails Source code
GetMaxNegCoeff Source code
GetMaxPCAComp Man page Source code
GetMaxPLSBiplotNum Source code
GetMaxPLSCVComp Source code
GetMaxPLSPairComp Source code
GetMaxPosCoeff Source code
GetMaxRawPVal Source code
GetMeanROC Man page Source code
GetMetPANodeInfo Source code
GetMetSetName Man page Source code
GetMetaByCol Source code
GetMetaDataGroups Source code
GetMetaGeneIDType Source code
GetMetaGroupNames Source code
GetMetaInfo Source code
GetMetaPathDataDims Source code
GetMetaPathGroupNames Source code
GetMetaPathNMs Source code
GetMetaPathResultColNames Source code
GetMetaPathResultItem Source code
GetMetaPathSanityCheckMsg Source code
GetMetaResultColNames Source code
GetMetaResultGeneIDLinks Source code
GetMetaResultGeneIDs Source code
GetMetaResultGeneSymbols Source code
GetMetaResultMatrix Man page Source code
GetMetaSanityCheckMsg Source code
GetMetaStat Source code
GetMetaStatNames Source code
GetMetaTypes Source code
GetMinConnectedGraphs Source code
GetMinGroupSize Source code
GetMinNegCoeff Source code
GetMinPosCoeff Source code
GetModelNames Source code
GetMsetLibCheckMsg Man page Source code
GetMsetMembers Source code
GetMsetNames Man page Source code
GetMsetReferences Source code
GetMummiDataType Source code
GetMummiMode Source code
GetMummiResColNames Source code
GetMummiResMatrix Source code
GetMummiResRowNames Source code
GetMummichogHTMLPathSet Source code
GetMummichogMZHits Source code
GetMummichogPathSetDetails Man page Source code
GetMyHeatCols Source code
GetNMDRStudy Man page Source code
GetNameCheckMsgs Source code
GetNetsEdgeNum Source code
GetNetsName Source code
GetNetsNameString Source code
GetNetsNodeNum Source code
GetNetsQueryNum Source code
GetNetworkGeneMappingResultTable Man page Source code
GetNewSampleGrps Source code
GetNewSampleNameVec Source code
GetNewSampleNames Man page Source code
GetNewSampleProbs Source code
GetNodeBetweenness Source code
GetNodeDegrees Source code
GetNodeEmblEntrezIDs Source code
GetNodeEntrezIDs Source code
GetNodeIDs Source code
GetNodeNames Source code
GetNonIncludedPrecMZRTs Source code
GetNonIncludedPrecMZs Source code
GetNormGroupNames Source code
GetNumberDoses Source code
GetOPLSLoadAxesSpec Source code
GetOPLSSigCmpds Source code
GetOPLSSigColNames Source code
GetOPLSSigMat Source code
GetORA.colorBar Source code
GetORA.keggIDs Source code
GetORA.mat Source code
GetORA.pathNames Man page Source code
GetORA.rowNames Source code
GetORA.smpdbIDs Man page Source code
GetORATable Man page Source code
GetOrgMummichogLbl Source code
GetOrgMummichogVal Source code
GetOrgPathLbl Source code
GetOrgPathVal Source code
GetOrigGrpNms Source code
GetOrigSmplGroupNamesPerMeta Source code
GetOrigSmplNms Source code
GetOrigSmplSize Source code
GetPCALoadAxesSpec Source code
GetPCALoadCmpds Source code
GetPCALoadCmpdsNlength Source code
GetPCALoadMat Source code
GetPCAPermANOVA Source code
GetPCAPermANOVAText Source code
GetPCAStats Source code
GetPLSBestTune Source code
GetPLSLoadAxesSpec Source code
GetPLSLoadCmpds Source code
GetPLSLoadMat Source code
GetPLSSigColNames Source code
GetPLSSigMat Source code
GetPLSSigRowNames Source code
GetPLS_CVColNames Source code
GetPLS_CVMat Source code
GetPLS_CVRowNames Source code
GetPathNames Source code
GetPeakFormat Source code
GetPleioRes.mat Source code
GetPowerValuesX Source code
GetPrenormClsNms Source code
GetPrenormFeatureNms Source code
GetPrenormFeatureNum Source code
GetPrenormSmplGroupNames Source code
GetPrenormSmplNms Source code
GetPrimaryType Source code
GetQEA.colorBar Source code
GetQEA.keggIDs Man page Source code
GetQEA.mat Source code
GetQEA.pathNames Man page Source code
GetQEA.rowNames Source code
GetQEA.smpdbIDs Source code
GetQEATable Man page Source code
GetQuery Source code
GetRCommandHistory Man page Source code
GetRFConf.Table Man page Source code
GetRFConfColNames Source code
GetRFConfMat Man page Source code
GetRFConfRowNames Source code
GetRFOOB Man page Source code
GetRFSigColNames Source code
GetRFSigMat Man page Source code
GetRFSigRowNames Source code
GetRGBColorGradient Source code
GetROC.coords Man page Source code
GetROCLassoFreq Man page Source code
GetROCTtestP Man page Source code
GetRandomNumbers Source code
GetRandomSubsetIndex Source code
GetRawClassNms Source code
GetRawCovThresh Source code
GetRawFileNms Source code
GetRefLibCheckMsg Source code
GetResCol Source code
GetResColByName Source code
GetResRowNames Source code
GetRocSigFileName Source code
GetSAMDeltaRange Source code
GetSAMSigColNames Source code
GetSAMSigMat Source code
GetSAMSigRowNames Source code
GetSOMClusterMembers Man page
GetSPLSLoadAxesSpec Source code
GetSPLSLoadCmpds Source code
GetSPLSLoadMat Source code
GetSPLSSigColNames Source code
GetSPLS_CVColNames Source code
GetSPLS_CVMat Source code
GetSPLS_CVRowNames Source code
GetSSP.Concs Source code
GetSSP.Details Source code
GetSSP.HMDB Source code
GetSSP.Names Source code
GetSSP.Notes Source code
GetSSP.Pmids Source code
GetSSP.RefConc Source code
GetSSP.RefConcs Source code
GetSSP.Refs Source code
GetSSP.States Source code
GetSSPTable Man page Source code
GetSVMSigColNames Source code
GetSVMSigMat Man page Source code
GetSVMSigRowNames Source code
GetSWATHDesginLow Source code
GetSWATHDesginUp Source code
GetSampleNames Source code
GetSampleSizeLadder Man page Source code
GetShapeSchema Source code
GetShortNames Source code
GetShortestPaths Source code
GetSigPathNums Source code
GetSigTable Man page Source code
GetSigTable.ASCA Man page Source code
GetSigTable.Anova Man page Source code
GetSigTable.Aov2 Man page Source code
GetSigTable.Corr Man page Source code
GetSigTable.Dose Man page Source code
GetSigTable.EBAM Man page Source code
GetSigTable.FC Man page Source code
GetSigTable.MB Man page Source code
GetSigTable.RF Man page Source code
GetSigTable.SAM Man page Source code
GetSigTable.SVM Man page Source code
GetSigTable.TT Man page Source code
GetSigTable.Volcano Man page Source code
GetSizeGradient Source code
GetSuggestedSAMDelta Man page Source code
GetSysMessages Source code
GetTTSigColNames Source code
GetTTSigMat Man page Source code
GetTTSigRowNames Source code
GetTopInx Man page Source code Source code
GetTrainTestSplitMat Man page Source code
GetTtCmpds Source code
GetTtDnIDs Source code
GetTtDnMat Source code
GetTtUpIDs Source code
GetTtUpMat Source code
GetTtestRes Man page Source code
GetTtestSigFileName Source code
GetUniqueMetaNames Source code
GetUnivRankedFeatureNames Source code
GetUnivReport Man page Source code
GetVariableLabel Man page Source code
GetVennPathsNames Source code
GetVolcanoCmpds Source code
GetVolcanoDnIDs Source code
GetVolcanoDnMat Source code
GetVolcanoSigColNames Source code
GetVolcanoSigMat Source code
GetVolcanoSigRowNames Source code
GetVolcanoUpLftIDs Source code
GetVolcanoUpLftMat Source code
GetVolcanoUpRgtIDs Source code
GetVolcanoUpRgtMat Source code
GetXYCluster Man page
GroupPeakList Man page Source code
HMDBID2KEGGID Man page Source code
HMDBID2Name Man page Source code
ImputeMissingVar Man page Source code
InitDataObjects Man page Source code
InitDrcFitObj Source code
InitItemSelect Source code
InitMSObjects Man page
InitPowerAnal Man page Source code
InitStatAnalMode Man page Source code
InitTimeSeriesAnal Man page Source code
InitializaPlan Man page Source code
IsDataContainsNegative Source code
IsSmallSmplSize Man page Source code
KEGGID2HMDBID Man page Source code
KEGGID2Name Man page Source code
KEGGPATHID2SMPDBIDs Man page Source code
KendallCorrFunc Source code
Kmeans.Anal Man page Source code
ListNMDRStudies Man page Source code
LoadKEGGKO_lib Man page Source code
LogNorm Man page Source code
MCVfold.splsda Source code
MapCmpd2KEGGNodes Man page Source code
MapKO2KEGGEdges Man page Source code
Match.Pattern Man page Source code
MatchQueryOnKEGGMap Source code
MeanCenter Source code
MedianNorm Source code
MergeDatasets Man page Source code
MergeDuplicates Man page Source code
MetaPathNormalization Man page Source code
MetaboAnalystR Man page
MetaboliteMappingExact Man page Source code
Normalization Man page Source code
OPLSDA.Permut Man page Source code
OPLSR.Anal Man page Source code
OrganizeJsonforNextwork Source code
OrganizeTarJsonforNextwork Source code
PCA.Anal Man page Source code
PCA.Flip Man page Source code
PCA.GENES Man page Source code
PLSDA.CV Man page Source code
PLSDA.Permut Man page Source code
PLSR.Anal Man page Source code
ParetoNorm Source code
PearsonCorrFunc Source code
Perform.ASCA Man page Source code
Perform.ASCA.permute Man page Source code
Perform.Permut Man page Source code
Perform.UnivROC Man page Source code
Perform.permutation Man page Source code
PerformAdductMapping Man page Source code
PerformApproxMatch Man page Source code
PerformBMDCalc Source code
PerformBatchCorrection Man page Source code
PerformCV.explore Man page Source code
PerformCV.test Man page Source code
PerformCmpdMapping Man page Source code
PerformCmpdMapping2 Source code
PerformCurrencyMapping Man page Source code
PerformDRFit Source code
PerformDSPC Source code
PerformDataInspect Man page Source code
PerformDataNormalization Source code
PerformDataTrimming Man page Source code
PerformDetailMatch Man page Source code
PerformDoseDEAnal Source code
PerformEachDEAnal Man page Source code
PerformEnrichAnalysis Source code
PerformExtractHMDBCMPD Source code
PerformFastUnivTests Source code
PerformFeatureFilter Source code
PerformGeneMapping Man page Source code
PerformIndNormalization Man page Source code
PerformIntegPathwayAnalysis Man page Source code
PerformKOEnrichAnalysis_KO01100 Man page Source code
PerformKOEnrichAnalysis_List Man page Source code
PerformLayOut Source code
PerformLimma Source code
PerformLimmaDE Man page Source code
PerformMRAnalysis Source code
PerformMS1ResultsFormatting Man page Source code
PerformMS2ResultsFormatting Man page Source code
PerformMapping_ko01100 Man page Source code
PerformMetaMerge Man page Source code
PerformMetaPSEA Man page Source code
PerformMirrorPlotting Man page Source code
PerformMirrorPlottingWeb Man page Source code
PerformMultiMatch Man page Source code
PerformNetEnrichment Source code
PerformPSEA Man page Source code
PerformParamsOptimization Man page Source code
PerformPeakProfiling Man page Source code
PerformPowerProfiling Man page Source code
PerformPvalCombination Man page Source code
PerformROIExtraction Man page Source code
PerformResultSummary Source code
PerformSWATHDesignDetection Source code
PerformSignalDriftCorrection Man page Source code
PerformSnpFiltering Source code
PerformVoteCounting Man page Source code
Plot.PairScatter Source code
Plot.Permutation Man page Source code
Plot.sampletrend Man page Source code
Plot3D Source code
PlotANOVA Man page Source code
PlotANOVA2 Man page Source code
PlotASCA.Permutation Man page Source code
PlotASCAInteraction Man page Source code
PlotASCAModel Man page Source code
PlotASCAModelScree Man page Source code
PlotAccuracy Man page Source code
PlotAscaImpVar Man page Source code
PlotClustPCA Man page
PlotCmpdSummary Man page Source code
PlotCmpdView Man page Source code
PlotConcRange Man page Source code
PlotConfusion Source code
PlotCorr Man page Source code
PlotCorrHeatMap Man page Source code
PlotCovariateMap Source code
PlotDRHistogram Source code
PlotDRModelBars Source code
PlotDataProfile Source code
PlotDetailROC Man page Source code
PlotEBAM.Cmpd Man page Source code
PlotEnrichDotPlot Man page Source code
PlotEnrichNet.Overview Man page Source code
PlotEnrichPieChart Man page Source code
PlotFC Man page Source code
PlotForest Source code
PlotFunnel Source code
PlotHCTree Man page Source code
PlotHeatMap Man page
PlotHeatMap2 Man page Source code
PlotImpBiomarkers Man page Source code
PlotImpVar Man page Source code
PlotImpVarMeta Man page Source code
PlotInmexGraph Man page Source code
PlotInmexPath Man page Source code
PlotKEGGPath Man page Source code
PlotKmeans Man page Source code
PlotLeaveOneOut Source code
PlotLoadBoxplot Source code
PlotMBTimeProfile Man page Source code
PlotMS2SummarySingle Source code
PlotMSEA.Overview Man page Source code
PlotMetaCorrHeatmap Man page Source code
PlotMetaHeatmap Man page Source code
PlotMetaboliteDRCurve Source code
PlotMetpaPath Man page Source code
PlotMultiFacCmpdSummary Man page Source code
PlotNetwork Source code
PlotNormSummary Man page Source code
PlotOPLS.Imp Man page Source code
PlotOPLS.MDL Man page Source code
PlotOPLS.Permutation Man page Source code
PlotOPLS.Splot Man page Source code
PlotOPLS2DScore Man page Source code
PlotORA Man page Source code
PlotPCA.overview Man page Source code
PlotPCA2DScore Man page Source code
PlotPCA3DLoading Man page Source code
PlotPCA3DScore Man page Source code
PlotPCA3DScoreImg Man page Source code
PlotPCABiplot Man page Source code
PlotPCALoading Man page Source code
PlotPCAPairSummary Man page Source code
PlotPCAPairSummaryMeta Source code
PlotPCAScree Man page Source code
PlotPLS.Classification Man page Source code
PlotPLS.Imp Man page Source code
PlotPLS.Permutation Man page Source code
PlotPLS2DScore Man page Source code
PlotPLS3DLoading Man page Source code
PlotPLS3DScore Man page Source code
PlotPLS3DScoreImg Man page Source code
PlotPLSBiplot Source code
PlotPLSLoading Man page Source code
PlotPLSPairSummary Man page Source code
PlotPSEAIntegPaths Man page Source code
PlotPathDataProfile Source code
PlotPathSummary Man page Source code
PlotPathSummaryGG Source code
PlotPathwayMetaAnalysis Man page Source code
PlotPeaks2Paths Man page Source code
PlotPowerProfile Man page Source code
PlotPowerStat Man page Source code
PlotProbView Man page Source code
PlotProbViewTest Man page Source code
PlotQEA.MetSet Man page Source code
PlotQEA.Overview Man page Source code
PlotRF.Classify Man page Source code
PlotRF.ClassifyMeta Man page Source code
PlotRF.Outlier Man page Source code
PlotRF.VIP Man page Source code
PlotRF.VIPMeta Man page Source code
PlotROC Man page Source code
PlotROC.LRmodel Man page Source code
PlotROCTest Man page Source code
PlotRSVM.Classification Man page Source code
PlotRSVM.Cmpd Man page Source code
PlotRocUnivBoxPlot Man page Source code
PlotSAM.Cmpd Man page Source code
PlotSAM.FDR Man page Source code
PlotSOM Man page Source code
PlotSPLS2DScore Man page Source code
PlotSPLS3DLoading Man page Source code
PlotSPLS3DScore Man page Source code
PlotSPLS3DScoreImg Man page Source code Source code
PlotSPLSDA.Classification Man page Source code
PlotSPLSLoading Man page Source code
PlotSPLSPairSummary Man page Source code
PlotSampleNormSummary Man page Source code
PlotScatter Source code
PlotSelectedFeature Man page Source code
PlotSigVar Man page Source code
PlotSpectraBPIadj Source code
PlotSpectraInsensityStatics Source code
PlotSpectraRTadj Source code
PlotStaticCorrHeatMap Man page Source code
PlotStaticHeatMap Man page
PlotStaticHeatMap2 Man page Source code
PlotStaticMetaHeatmap Man page Source code
PlotSubHeatMap Man page
PlotTT Man page Source code
PlotTestAccuracy Man page Source code
PlotVolcano Man page Source code
PlotXIC Man page Source code
PlotXICUpdate Source code
PlotlyPeaks2Paths Source code
Predict.class Man page Source code
Prepare4IntegNetwork Source code
Prepare4Network Source code
Prepare4TarIntegNetwork Source code
PrepareCMPDList Source code
PrepareDataForDoseResponse Source code
PrepareIntegCMPDList Source code
PrepareIntegData Man page Source code
PrepareKeggQueryJson Man page Source code
PrepareLatex Source code
PrepareMetaPath Man page Source code
PrepareMetaPathData Source code
PrepareMgwasCSV Source code
PrepareNetwork Source code
PrepareNetworkData Man page Source code
PreparePDFReport Man page Source code
PreparePeakTable4PSEA Man page Source code
PreparePermResult Man page Source code
PreparePrenormData Man page Source code
PrepareROCData Man page Source code
PrepareROCDetails Man page Source code
PrepareSifDownloads Source code
PrepareSigDRItems Source code
PrepareSpec4Switch Source code
PrepareSubnetDownloads Source code
PrepareUpsetData Man page Source code
ProbNorm Source code
QC_RLSC Source code
QuantileNormalize Source code
Query.mGWASDB Source code
QueryExposure Source code
QueryOutcome Source code
QueryPhenoSQLite Source code
RF.Anal Man page Source code
RF.AnalMeta Man page Source code
ROCPredSamplesTable Man page Source code
RSVM Man page Source code
RSVM.Anal Man page Source code
RUV_2 Source code
RUV_random Source code
RUVg_cor Source code
RUVr_cor Source code
RUVs_cor Source code
RangeNorm Source code
RankFeatures Man page Source code
Read.BatchDataBC Man page Source code
Read.BatchDataTB Man page Source code
Read.PeakList Man page Source code
Read.PeakListData Man page Source code
Read.PeakMS2ListData Source code
Read.SignalDriftData Man page Source code
Read.TextData Man page Source code
Read.TextDataDose Source code
Read.TextDataTs Man page Source code
Read.duplicatesDataTable Source code
Read.mzTab Man page Source code
ReadIndData Man page Source code
ReadMetaData Man page Source code
ReadMetaPathTable Man page Source code
ReadMetaPathTableMix Man page Source code
ReadMetabolonSheets Source code
ReadPairFile Man page Source code
ReadRawMeta Source code
ReadXLSXsheetsInfo Source code
RecordRCommand Man page Source code
RecordSysMessage Source code
RegisterData Man page Source code
RemoveCmpd Man page Source code
RemoveData Man page Source code
RemoveDuplicates Man page Source code
RemoveEntriesExposure Source code
RemoveEntryExposure Source code
RemoveFile Man page Source code
RemoveFolder Man page Source code
RemoveGene Man page Source code
RemoveMissingPercent Man page Source code
RemoveSelectedMeta Source code
ReplaceMin Man page Source code
ReplaceMissingByLoD Source code
RequireFastUnivTests Source code
RerenderMetPAGraph Man page Source code
ResetBatchData Source code
Restore.CmdHistory Source code
SAM.Anal Man page Source code
SOM.Anal Man page Source code
SPLSR.Anal Man page Source code
SSPA_pilotData Source code
SSPA_plot Source code
SaintyCheckMSPfile Man page Source code
SanityCheckData Man page Source code
SanityCheckIndData Man page Source code
SanityCheckMeta Man page Source code
SanityCheckMetaPathTable Man page Source code
SanityCheckMummichogData Man page Source code
Save2KEGGJSON Source code
SaveCurrentSession Source code
SaveRCommands Source code
SaveTransformedData Man page Source code
SearchByCompound Man page Source code
SearchByName Man page Source code
SearchMsetLibraries Man page Source code
SearchNetDB Man page Source code
SelectMultiData Man page Source code
SelectMultiPathData Source code
SetAnalType Source code
SetAnalysisMode Man page Source code
SetCachexiaSetUsed Man page Source code
SetCandidate Man page Source code
SetCmpdSummaryType Source code
SetCurrentGroups Man page Source code
SetCurrentMsetLib Man page Source code
SetCustomData Man page Source code
SetDataTypeOfMeta Man page Source code
SetDbOpt Source code
SetDesignType Man page Source code
SetKEGG.PathLib Man page Source code
SetLDProxy Source code
SetLDR2 Source code
SetMRMethod Source code
SetMS2IDType Source code
SetMappingType Source code
SetMetaPeaksPvals Source code
SetMetaTypes Source code
SetMetabolomeFilter Man page Source code
SetMummichogPval Man page Source code
SetMummichogPvalFromPercent Man page Source code
SetOrganism Man page Source code Source code
SetPeakEnrichMethod Man page Source code
SetPeakFormat Man page Source code
SetPeakList.GroupValues Man page Source code
SetPeakParam Man page Source code
SetRTincluded Man page Source code
SetRawFileNames Source code
SetSMPDB.PathLib Man page Source code
SetSelectedMetaInfo Source code
SetUserPath Source code
Setcurrentmsmsidx Source code
Setup.AdductData Man page Source code
Setup.BiofluidType Man page Source code
Setup.ConcData Man page Source code
Setup.HMDBReferenceMetabolome Man page Source code
Setup.KEGGReferenceMetabolome Man page Source code
Setup.MapData Man page Source code
Setup.UserMsetLibData Man page Source code
SetupIndListData Source code
SetupKEGGLinks Man page Source code
SetupListData Source code
SetupMetaStats Source code
SetupSMPDBLinks Man page Source code
ShowMemoryUse Source code
SpearmanCorrFunc Source code
SquareRootNorm Source code
SumNorm Man page Source code
SummarizeCMPDResults Source code
TableFormatCoerce Source code
Ttests.Anal Man page Source code
UniqueDataSet Source code
UnzipUploadedFile Man page Source code
Update.MapData Source code
UpdateData Man page Source code
UpdateDataObjects Source code
UpdateDataSet Source code
UpdateEC_Rules Man page Source code
UpdateFeatureName Source code
UpdateGraphSettings Man page Source code
UpdateInstrumentParameters Man page Source code
UpdateIntegPathwayAnalysis Man page Source code
UpdateKmeans Source code
UpdateLoadingCmpd Source code
UpdateMetaColName Source code
UpdateMetaData Source code
UpdateMetaLevels Source code
UpdateMetaOrder Source code
UpdateMetaType Source code
UpdateNetworkLayout Source code
UpdateOPLS.Splot Man page Source code
UpdatePCA.Loading Man page Source code
UpdatePLS.Loading Man page Source code
UpdateSampleGroups Source code
UpdateSubnetStats Source code
Updatecurrentmsmsidx Source code
UpgradeDataSet Source code
ValidateFeatureName Source code
ValidateMetaFactor2Level Source code
ValidateMetabolonData Source code
Volcano.Anal Man page Source code
WaveICA Source code
XSet2MSet Man page Source code
addEntrezID Source code
all_identical Source code
analyze.lipids Man page Source code
aof Man page Source code
aov.1wayrep Man page Source code
aov.2way Man page Source code
aov.2wayrep Source code
aov.mixed Man page Source code
as.num Source code
bmdres Source code
calculateConcISO Man page Source code
calculateConcNoISO Source code
cancelMS2Job Source code
capture_messages Source code
centroidMSData Source code
checkCVperformed Source code
checkDataGenericFormat Source code
checkdataexits Source code
checkfac Source code
checking Source code
cleanEICLayer Source code
cleanMem Source code
color_scale Source code
combat Source code
combinePvals Source code
community.significance.test Source code
computeConc Man page Source code
concplot Source code
congrad Source code
congradControl Source code
convert.rda2qs Source code
convert.rds2qs Source code
convert2JsonList Source code
convert2NLspec Source code
convertCovariate2Fun Source code
convertIgraph2JSON Source code
count_cpd2mz Source code
createCVset Man page Source code
createFeatureAnnoSum Source code
createFeatureAnnotationSumTable Source code
createFeatureCompoundSumTable Source code
createFeatureEIC Source code
createFeatureEICStats Source code
createFeatureSumDoc Source code
createResSumText Source code
createSLURMBash Source code
createSpectraSumDoc Source code
createSpectraSumTable Source code
createSpectraTIC Source code
deconvControl Source code
defineVersion Source code
define_EffectSizeRange Source code
defl.select Source code
deflation Source code
descendMin Man page Source code
doCompoundMapping Man page Source code
doGene2KONameMapping Source code
doGeneIDMapping Man page Source code Source code
doHeatmapMummichogTest Source code
doID2LabelMapping Source code
doKEGG2NameMapping Man page Source code
doKOFiltering Man page Source code
doLogisticRegMdl Man page Source code
end.with Source code
explained_variance Source code
exportSwathDesign Source code
extractCompoundIDs Source code
extractMetaFactors Source code
extractTopFeatures Source code
fast.write.csv Source code
fgsea2 Source code
fig2dev Source code
fillpathways Source code
findEqualGreaterM Man page Source code
findroot Source code
finishsearchingjob Source code
fitFDist Source code
flatten_response Source code
fmatch_r Source code
formatfunresult Source code
fun.boot Source code
genLREquation Source code
generateAsariPeakList Source code
generateMS2dbOpt Source code
generate_breaks Source code
get.BER Source code
get.confusion_matrix Source code
get.name.and.value Source code
getBloodRawData Source code
getCOVIDRawData Source code
getDataFromTextArea Man page Source code
getEdgeLabel Source code
getEdgeLty Source code
getFactorSize Source code
getFeatureNum Source code
getIdx Source code
getLayout Source code
getMalariaRawData Source code
getMetabolonCMPDIDs Source code
getMetabolonMetaFactor Source code
getPCALoadCmpdsSplit Source code
getSpectraInclusion Source code
getVennCounts Source code
get_lower_tri Source code
get_pheatmap_dims Source code Source code
get_upper_tri Source code
getndp Source code
gg2list_new Source code
gg_color_hue Source code
ggplotly_modified Source code
heckbert Man page Source code
hex2rgb Source code
hex2rgba Source code
iPCA.Anal Man page Source code
image.plot Source code
image.plot.plt Source code
internal_predict.DA Source code
internal_wrapper.mint Source code
is.string Source code
isEmptyMatrix Man page Source code
kwtest Man page Source code
l2.norm Source code
loadMS2ResultmSet Source code
load_RBGL Source code
load_RSclient Source code
load_Rserve Source code
load_biocparallel Source code
load_caret Source code
load_data.table Source code
load_ggplot Source code
load_gplots Source code
load_graph Source code
load_grid Source code
load_httr Source code
load_igraph Source code
load_kegggraph Source code
load_lattice Source code
load_msnbase Source code
load_pls Source code
load_progress Source code
load_rcolorbrewer Source code
load_reshape Source code
load_rgraphwiz Source code
load_rsqlite Source code Source code
load_stringr Source code
logisticReg Source code
mSetQSDelete Source code
make_cpdlib Source code
make_cpdlist Man page Source code
make_ecpdlist Man page Source code
map Man page
matrix.cov Source code
mb.1D Source code
mb.2D Source code
mean_centering_per_study Source code
melt Man page Source code
melt.array Source code
melt.data.frame Source code
melt.default Source code
melt.list Source code
melt_check Source code
melt_dataframe Source code
midpoint Source code
msmsResClean Source code
multi.stat Man page Source code
my.approx.match Source code
my.batch.correct Source code
my.clean.lipid Source code
my.col2rgb Source code
my.col2rgba Source code
my.fgsea Source code
my.get.nmdr.data Source code
my.hyperscore.kegg Source code
my.impute.missing Source code
my.integ.kegg Source code
my.json.scatter Source code
my.kegg.plot Source code
my.list.heatmap Source code
my.lsd.test Man page Source code
my.namemap.api Source code
my.ora.kegg Source code
my.parse.mztab Source code
my.parse.peaklist Man page Source code
my.pathway.qea Source code
my.plot.scatter3d Source code
my.plot.venn Source code
my.plot.volcano Source code
my.qea.kegg Source code
my.read.metabolon.sheets Source code
my.save.data Source code
my.time.mb.1d Source code
my.time.mb.2d Source code
my.univ.report Source code
my.validate.metabolon.data Source code
myFastList Source code
mz_tolerance Source code
mzrt2ID Source code
mzrt2ID2 Source code
newDataset Source code
new_adduct_mzlist Source code
nncg Source code
normalize_melt_arguments Source code
ot.helmert Source code
overlap_ratio Source code
parseFisher Man page Source code
parseTukey Man page Source code
perf.splsda Source code
performDuplicateEstimation Source code
performMB Man page Source code
performMS2searchBatch Man page Source code
performMS2searchSingle Man page Source code
plotBPIs Source code
plotGraph Source code
plotMSfeature Man page Source code
plotMirror Man page Source code
plotProfile Man page
plotSingleTIC Man page Source code
plotSingleXIC Source code
plotTICs Source code
plotVennDiagram Source code
plot_dist Man page Source code
plotms2Mirror Source code
plotrawms2Mirror Source code
plt2fig Source code
predict.spls Source code
predictpower Source code
prepareContrast Source code
processMSMSupload Man page Source code
psea.heatmap.json Source code
pull_as_location2 Source code
pureErrorAnova Source code
pureErrorAnova.lm Source code
pvalue Source code
qc.biBoxPlot Source code
qc.boxplot Source code
qc.pcaplot Source code
randomLinComb Source code
randomLinComb.default Source code
randomLinComb.lm Source code Source code
rda2list Source code
readAdductsList Source code
readMgfSpectra Source code
readOpenGWASKey Source code
readProgressSec Source code
rectUnique Man page Source code
rescale2NewRange Source code
retrieveAlgorithmInfo Source code
retrieveModeInfo Source code
rgb_array_to_hex_array Source code
rgb_to_hex Source code
rgba_to_hex_opacity Source code
rowcolFt Source code
rowcoltt Source code
sampleSize Source code
saveCurrentSession Source code
saveNetworkInSIF Source code
saveParams4Processing Source code
savePeakListMetaData Man page Source code
scale.function Source code
scale_mat Source code
scale_range Source code
scale_rows Source code
scale_vec_colours Source code
selectVar Source code
sensPOD Source code
setInclusionDataSets Man page Source code
setMS2DBOpt Man page Source code
setRatioOption Source code
setRendAttrs Source code
simpson Source code
soft_thresholding_L1 Source code
sparse.mint.block_iteration Man page Source code
sparsity Source code
spectraInclusion Source code
splsda Man page Source code
squeezeVar Source code
startvalExp2 Source code
startvalExp3 Source code
startvalExp4 Source code
startvalExp5 Source code
startvalHillnls2 Source code
startvalPow Source code
stop_for_status Source code
stratified.subsampling Source code
study_split Source code
sum.na Source code
sumSquare Source code
sumlog Source code
sump Source code
sumz Source code
sync2vecs Source code
template.match Man page Source code
template.pmatch Source code
tikhonovControl Source code
trapezoidal Source code
trigammaInverse Source code
trimbin Source code
updateSpectra3DPCA Source code
usr2dev Source code
usr2plt Source code
usr2png Man page Source code
var.na Source code
verifyParam Source code
votep Source code
xytrans Source code
xytrans2 Source code
xia-lab/MetaboAnalystR documentation built on Dec. 23, 2024, 3:44 p.m.

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close