Files in xia-lab/MetaboAnalystR
An R Package for Comprehensive Analysis of Metabolomics Data

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

MetaboAnalystR.Rproj

NAMESPACE

R/all_generic_utils.R R/batch_effect_utils.R R/biomarker_utils.R R/depends_refs.R R/dose_response_deanal.R R/dose_response_general.R R/dose_response_graphs.R R/dose_response_utils.R R/duplicates_estimates.R R/enrich_graphics.R R/enrich_integ.R R/enrich_kegg.R R/enrich_mset.R R/enrich_name_match.R R/enrich_path_graphics.R R/enrich_path_stats.R R/enrich_stats.R R/gene_fun_utils.R R/general_anot_utils.R R/general_data_utils.R R/general_lib_utils.R R/general_misc_utils.R R/general_norm_utils.R R/general_proc_utils.R R/generic_c_utils.R R/meta_data_utils.R R/meta_methods.R R/meta_pathway.R R/mgwas_data.R R/mgwas_misc.R R/mgwas_mr.R R/multifac_asca_heatmap2.R R/multifac_covariate.R R/multifac_mb.R R/multifac_metadata.R R/multifac_pca_anova2.R R/networks_enrich.R R/networks_view.R R/others_lipomics.R R/peaks_ms2fun.R R/peaks_to_function.R R/plotly_utils.R R/power_utils.R R/rpackage_config.R R/spectra_processing.R R/stats_chemometrics.R R/stats_classification.R R/stats_clustering.R R/stats_correlations.R R/stats_opls.R R/stats_peaks.R R/stats_plot3d.R R/stats_sigfeatures.R R/stats_spls.R R/stats_univariates.R R/sweave_report_biomarker.R R/sweave_report_enrichment.R R/sweave_report_integmex.R R/sweave_report_meta_analysis.R R/sweave_report_metamummi.R R/sweave_report_mummichog.R R/sweave_report_network.R R/sweave_report_pathway.R R/sweave_report_power.R R/sweave_report_raw_spectra.R R/sweave_report_stats.R R/sweave_report_time.R R/sweave_reporter.R R/tandem_ms.R R/util_api.R R/util_approx.R R/util_batch.R R/util_compatibility.R R/util_fgsea.R R/util_heatmap.R R/util_lipid.R R/util_listheatmap.R R/util_lsd.R R/util_metabolon.R R/util_missing.R R/util_multifac_mb_1d.R R/util_multifac_mb_2d.R R/util_multifac_mb_manova.R R/util_mztab.R R/util_nmdr.R R/util_peaks.R R/util_plot3d.R R/util_psea.R R/util_savedata.R R/util_scatter3d.R R/util_sspa.R R/util_univreport.R R/util_venndiagram.R R/util_volcano.R README.md

inst/CITATION

inst/docs/MetaboAnalystR_3.0.0_manual.pdf

inst/docs/MetaboAnalystRlogo.png

inst/docs/cran-comments.md

inst/docs/log_v3.0.png

inst/lists/ions.csv

inst/lists/neutraladdition.csv

inst/lists/neutralloss.csv

inst/rules/extended_adducts_neg.csv

inst/rules/extended_adducts_pos.csv

inst/rules/primary_adducts_neg.csv

inst/rules/primary_adducts_pos.csv

src/Exports.cpp

src/Makevars

src/Makevars.win

src/c/Internal_utils_batch.c

src/c/Internal_utils_batch.h

src/c/common.h

src/c/fastmatch.c

src/c/mzROI.c

src/c/nncgc.c

src/c/util.c

src/c/util.h

src/c/xcms_binners.c

src/c/xcms_binners.h

src/cpp/melt.cpp

src/fortran/decorana.f

tests/testthat.R tests/testthat/test-basic.R tests/testthat/test-metaboanalystr-analytical.R tests/testthat/test-metaboanalystr-pathway-enrichment.R

xia-lab/MetaboAnalystR documentation built on Dec. 23, 2024, 3:44 p.m.

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xia-lab/MetaboAnalystR
An R Package for Comprehensive Analysis of Metabolomics Data

Files in xia-lab/MetaboAnalystR
An R Package for Comprehensive Analysis of Metabolomics Data

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xia-lab/MetaboAnalystR
An R Package for Comprehensive Analysis of Metabolomics Data

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An R Package for Comprehensive Analysis of Metabolomics Data