| %>% |
Man page
|
| .onLoad |
Source code
|
| .plot_start |
Source code
|
| .restore_seed |
Source code
|
| .scdb_add_obj |
Source code
|
| .scdb_del_obj |
Source code
|
| .scdb_get_obj |
Source code
|
| .scdb_obj_fn |
Source code
|
| .scm_init_md |
Source code
|
| .set_seed |
Source code
|
| .vals_to_n |
Source code
|
| allrow_cor |
Man page
Source code
|
| build_growth_mats |
Source code
|
| coc_dissect_louvain |
Source code
|
| coc_dissect_mc |
Source code
|
| cormat_to_balanced_knn |
Source code
|
| deform_boom |
Source code
|
| deform_snail |
Source code
|
| gen_10x_mars_gene_match |
Man page
Source code
|
| gen_fig_cmp_dir |
Source code
|
| gen_lp_from_net |
Source code
|
| gen_sub_coclust |
Source code
|
| gset_add_genes |
Man page
Source code
|
| gset_get_feat_mat |
Man page
Source code
|
| gset_get_genes |
Man page
Source code
|
| gset_import_table |
Man page
Source code
|
| gset_new_gset |
Man page
Source code
|
| gset_new_restrict_gset |
Man page
Source code
|
| gset_new_restrict_nms |
Man page
Source code
|
| gset_write_table |
Man page
Source code
|
| initialize,tgCellGraph-method |
Man page
|
| initialize,tgCoClust-method |
Man page
|
| initialize,tgGeneSets-method |
Man page
|
| initialize,tgMC2D-method |
Man page
|
| initialize,tgMCAtlas-method |
Man page
|
| initialize,tgMCCov-method |
Man page
|
| initialize,tgMCManifGraph-method |
Man page
|
| initialize,tgMCTNetwork-method |
Man page
|
| mc2d_comp_cell_coord |
Source code
|
| mc2d_comp_graph_coord |
Source code
|
| mc2d_comp_graph_coord_umap |
Source code
|
| mc2d_comp_mgraph |
Source code
|
| mc2d_comp_mgraph_param |
Source code
|
| mc_colorize |
Man page
Source code
|
| mc_colorize_default |
Man page
Source code
|
| mc_colorize_from_ref_mc |
Man page
Source code
|
| mc_colorize_sup_hierarchy |
Man page
Source code
|
| mc_compute_cov_gc |
Man page
Source code
|
| mc_compute_e_gc |
Man page
Source code
|
| mc_compute_fp |
Man page
Source code
|
| mc_compute_n_bc |
Man page
Source code
|
| mc_compute_outlier_fc |
Man page
Source code
|
| mc_plot_submc |
Source code
|
| mc_reorder |
Man page
Source code
|
| mc_restrict |
Man page
Source code
|
| mc_set_outlier_mc |
Man page
Source code
|
| mc_update_stats |
Man page
Source code
|
| mcatlas_annotate_mc_by_mc2mc_projection |
Man page
Source code
|
| mcatlas_annotate_mc_by_sc2mc_projection |
Man page
Source code
|
| mcatlas_annotate_mc_by_sc2sc_projection |
Man page
Source code
|
| mcatlas_annotate_sc_by_projection |
Source code
|
| mcatlas_comp_adj_type_n |
Man page
Source code
|
| mcatlas_project_query |
Man page
Source code
|
| mcatlas_update_internal_cors |
Source code
|
| mcell_add_cgraph_bknn_norm_mc |
Man page
Source code
|
| mcell_add_cgraph_from_distmat |
Man page
Source code
|
| mcell_add_cgraph_from_mat_bknn |
Man page
Source code
|
| mcell_add_cgraph_from_mat_raw_knn |
Man page
Source code
|
| mcell_add_gene_names_xref_mars10x |
Man page
Source code
|
| mcell_add_gene_stat |
Man page
Source code
|
| mcell_add_mars_facs_data |
Man page
Source code
|
| mcell_add_mc_from_graph |
Man page
Source code
|
| mcell_batch_stats |
Man page
Source code
|
| mcell_calc_one_batch_stats |
Man page
Source code
|
| mcell_cgraph_norm_gcor |
Man page
Source code
|
| mcell_coclust_filt_by_k_deg |
Man page
Source code
|
| mcell_coclust_from_graph_resamp |
Man page
Source code
|
| mcell_compare_bulk |
Man page
Source code
|
| mcell_gen_atlas |
Man page
Source code
|
| mcell_gen_cell_cor_gset |
Man page
Source code
|
| mcell_graph_pred_corr |
Man page
Source code
|
| mcell_gset_add_gene |
Man page
Source code
|
| mcell_gset_filter_cov |
Man page
Source code
|
| mcell_gset_filter_multi |
Man page
Source code
|
| mcell_gset_filter_szcor |
Man page
Source code
|
| mcell_gset_filter_varmean |
Man page
Source code
|
| mcell_gset_from_mc_markers |
Man page
Source code
|
| mcell_gset_remove_clusts |
Man page
Source code
|
| mcell_gset_split_by_dsmat |
Man page
Source code
|
| mcell_import_multi_mars |
Man page
Source code
|
| mcell_import_multi_scmat_10x |
Man page
Source code
|
| mcell_import_scmat_10x |
Man page
Source code
|
| mcell_import_scmat_10x_custom |
Source code
|
| mcell_import_scmat_tsv |
Man page
Source code
|
| mcell_mat_ignore_cells |
Man page
Source code
|
| mcell_mat_ignore_genes |
Man page
Source code
|
| mcell_mat_ignore_small_cells |
Man page
Source code
|
| mcell_mat_rpt_cor_anchors |
Man page
Source code
|
| mcell_mc2d_force_knn |
Man page
Source code
|
| mcell_mc2d_force_knn_on_cells |
Man page
Source code
|
| mcell_mc2d_plot |
Man page
Source code
|
| mcell_mc2d_plot_by_factor |
Man page
Source code
|
| mcell_mc2d_plot_gene |
Man page
Source code
|
| mcell_mc2d_rotate |
Man page
Source code
|
| mcell_mc_add_annot |
Man page
Source code
|
| mcell_mc_add_color |
Man page
Source code
|
| mcell_mc_cell_homogeneity |
Man page
Source code
|
| mcell_mc_coclust_confusion_mat |
Man page
Source code
|
| mcell_mc_confusion_mat |
Man page
Source code
|
| mcell_mc_edge_density |
Man page
Source code
|
| mcell_mc_export_tab |
Man page
Source code
|
| mcell_mc_from_coclust_balanced |
Man page
Source code
|
| mcell_mc_from_coclust_hc |
Man page
Source code
|
| mcell_mc_from_coclust_louv_sub |
Man page
Source code
|
| mcell_mc_hclust_confu |
Man page
Source code
|
| mcell_mc_hierarchy |
Man page
Source code
|
| mcell_mc_match_graph |
Man page
Source code
|
| mcell_mc_plot_by_factor |
Man page
Source code
|
| mcell_mc_plot_confusion |
Man page
Source code
|
| mcell_mc_plot_gg |
Man page
Source code
|
| mcell_mc_plot_hierarchy |
Man page
Source code
|
| mcell_mc_plot_marks |
Man page
Source code
|
| mcell_mc_plot_submc_marks |
Man page
Source code
|
| mcell_mc_plot_vgels |
Man page
Source code
|
| mcell_mc_pred_corr |
Man page
Source code
|
| mcell_mc_reorder_hc |
Man page
Source code
|
| mcell_mc_screen_outliers_1gene_fold |
Man page
Source code
|
| mcell_mc_split_by_color_group |
Man page
Source code
|
| mcell_mc_split_filt |
Man page
Source code
|
| mcell_merge_mats |
Man page
Source code
|
| mcell_mgraph_knn |
Man page
Source code
|
| mcell_mgraph_logistic |
Man page
Source code
|
| mcell_new_mc |
Man page
Source code
|
| mcell_new_mc2d |
Man page
Source code
|
| mcell_new_mc_mgraph |
Man page
Source code
|
| mcell_new_mcatlas |
Man page
Source code
|
| mcell_new_mctnetwork |
Man page
Source code
|
| mcell_pipe_mat2mc2d |
Man page
Source code
|
| mcell_plot_batch_stats |
Man page
Source code
|
| mcell_plot_cross_mc |
Man page
Source code
|
| mcell_plot_freq_compare |
Source code
|
| mcell_plot_gset_cor_mats |
Man page
Source code
|
| mcell_plot_gstats |
Man page
Source code
|
| mcell_plot_outlier_heatmap |
Man page
Source code
|
| mcell_plot_umis_per_cell |
Man page
Source code
|
| mcell_proj_on_atlas |
Man page
Source code
|
| mcell_read_multi_scmat_10x |
Man page
Source code
|
| mcell_read_multi_scmat_mars |
Man page
Source code
|
| mcell_scmat_plot_cmp_kcor |
Man page
Source code
|
| mcell_wgtmc_pred_corr |
Man page
Source code
|
| mctnetwork_clust_flows |
Man page
Source code
|
| mctnetwork_comp_manifold_costs |
Man page
Source code
|
| mctnetwork_comp_propagation |
Man page
Source code
|
| mctnetwork_gen_e_gmt_p |
Man page
Source code
|
| mctnetwork_gen_gmod_mc_t |
Man page
Source code
|
| mctnetwork_gen_mincost_flows |
Man page
Source code
|
| mctnetwork_gen_network |
Man page
Source code
|
| mctnetwork_get_egc_on_cluster_transition |
Source code
|
| mctnetwork_get_flow_mat |
Man page
Source code
|
| mctnetwork_get_type_flows |
Man page
Source code
|
| mctnetwork_mc_rank_from_color_ord |
Source code
|
| mctnetwork_plot_cormat |
Source code
|
| mctnetwork_plot_net |
Source code
|
| mctnetwork_plot_propagation |
Source code
|
| mctnetwork_propogate_from_t |
Man page
Source code
|
| metacell |
Man page
|
| mgraph_comp_knn |
Source code
|
| mgraph_comp_logist |
Source code
|
| network_lp_constraints |
Source code
|
| plot_color_bar |
Man page
Source code
|
| port_cor |
Man page
Source code
|
| rescale_sparse_mat_cols |
Man page
Source code
|
| scdb_add_cgraph |
Man page
Source code
|
| scdb_add_coclust |
Man page
Source code
|
| scdb_add_gene_names_xref |
Man page
Source code
|
| scdb_add_gset |
Man page
Source code
|
| scdb_add_gstat |
Man page
Source code
|
| scdb_add_mat |
Man page
Source code
|
| scdb_add_mc |
Man page
Source code
|
| scdb_add_mc2d |
Man page
Source code
|
| scdb_add_mcatlas |
Man page
Source code
|
| scdb_add_mctnetwork |
Man page
Source code
|
| scdb_add_mgraph |
Man page
Source code
|
| scdb_cgraph |
Man page
Source code
|
| scdb_coclust |
Man page
Source code
|
| scdb_del_cgraph |
Man page
Source code
|
| scdb_del_coclust |
Man page
Source code
|
| scdb_del_gene_names_xref |
Man page
Source code
|
| scdb_del_gset |
Man page
Source code
|
| scdb_del_gstat |
Man page
Source code
|
| scdb_del_mat |
Man page
Source code
|
| scdb_del_mc |
Man page
Source code
|
| scdb_del_mc2d |
Man page
Source code
|
| scdb_del_mcatlas |
Man page
Source code
|
| scdb_del_mctnetwork |
Man page
Source code
|
| scdb_del_mgraph |
Man page
Source code
|
| scdb_gene_names_xref |
Man page
Source code
|
| scdb_gset |
Man page
Source code
|
| scdb_gstat |
Man page
Source code
|
| scdb_init |
Man page
Source code
|
| scdb_is_valid |
Man page
Source code
|
| scdb_ls |
Man page
Source code
|
| scdb_ls_loaded |
Man page
Source code
|
| scdb_mat |
Man page
Source code
|
| scdb_mc |
Man page
Source code
|
| scdb_mc2d |
Man page
Source code
|
| scdb_mcatlas |
Man page
Source code
|
| scdb_mctnetwork |
Man page
Source code
|
| scdb_mgraph |
Man page
Source code
|
| scfigs_dir |
Man page
Source code
|
| scfigs_fn |
Man page
Source code
|
| scfigs_init |
Man page
Source code
|
| scm_add_mars_facs_data |
Man page
Source code
|
| scm_downsamp |
Man page
Source code
|
| scm_export_mat_to_sce |
Man page
Source code
|
| scm_gene_stat |
Man page
Source code
|
| scm_ignore_cells |
Man page
Source code
|
| scm_ignore_genes |
Man page
Source code
|
| scm_import_sce_to_mat |
Man page
Source code
|
| scm_merge_mats |
Man page
Source code
|
| scm_new_matrix |
Man page
Source code
|
| scm_sub_mat |
Man page
Source code
|
| scm_which_downsamp_n |
Man page
Source code
|
| scmat_read_scmat_10x |
Man page
Source code
|
| scmat_read_scmat_10x_custom |
Man page
Source code
|
| set_lp_net_maxflow |
Source code
|
| tba |
Source code
|
| tgCellGraph |
Man page
|
| tgCellGraph-class |
Man page
|
| tgCoClust |
Man page
|
| tgCoClust-class |
Man page
|
| tgGeneSets |
Man page
|
| tgGeneSets-class |
Man page
|
| tgMC2D |
Man page
|
| tgMC2D-class |
Man page
|
| tgMCAtlas |
Man page
|
| tgMCAtlas-class |
Man page
|
| tgMCCov |
Man page
|
| tgMCCov-class |
Man page
|
| tgMCManifGraph |
Man page
|
| tgMCManifGraph-class |
Man page
|
| tgMCTNetwork |
Man page
|
| tgMCTNetwork-class |
Man page
|
| tgScMat |
Man page
|
| tgScMat-class |
Man page
|
| tgs_cor_graph |
Man page
Source code
|
| translate_mat_gnames |
Source code
|
