Biocview "CellBasedAssays"

Accelerated similarity searching of small molecules

Add-on to CellNOptR: Discretized time treatments

Advanced analysis of microbial flow cytometry data

A model for network-based prioritisation of genes

An algorithm to find optimal signal levels in a tree

Analysis of cell-based screens - revised version of cellHTS

Analysis of co-knock-down RNAi data

Analysis of FACS data for the Jurkat crible project

Analysis of high-throughput microscopy-based screens

Analyze flow cytometric data using gate information

Analyze flow cytometric data using histogram information

Annotation and analysis of biological dynamical systems using flow cytometry

An R package of Data Importing, Processing and Analysis for Opera High Content Screening System

A pipeline for processing drug sensitivity screen data

A Toolkit for Flow And Mass Cytometry Data

Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions

Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis

Base NanoString Experiment Class

BraDiPluS - Braille Display Plugs Data Analysis

Calculate growth-rate inhibition (GR) metrics

Cheminformatics Toolkit for R

Clonogenic Survival Analysis in R made easy!

Clustering Deviation Index (CDI)

Combining multitube flow cytometry data by binning

Conditional Differential Analysis for Flow and Mass Cytometry Experiments

Creates diffusion maps

Cross-target analysis of small molecule bioactivity

Data analysis for cell-based functional assays

Determination of essential phenotypic elements of clusters in high-dimensional entities

Differential abundance analysis with a right censored covariate in high-dimensional cytometry

Differential discovery in high-dimensional cytometry via high-resolution clustering

Differential expression analysis and model fitting for single-cell RNA-seq data

Differential expression analysis of longitudinal count data sets

Dose Response Curve Evaluation from Incucyte and Other High-Throughput Platforms

Estimate Pairwise Interactions from multidimensional features

Estimate proliferation in cell-tracking dye studies

Fingerprinting for Flow Cytometry

Fitting cell population growth models

flowBeads: Analysis of flow bead data

flowCore: Basic structures for flow cytometry data

flowPlots: analysis plots and data class for gated flow cytometry data

Gaussian mixture modeling for heavy-tailed distributions in Flow Cytometry data

Gene set over-representation, enrichment and network analyses for high-throughput screens

Gene-Specific Phenotype EstimatoR

Hits Selection for Synthetic Lethal RNAi Screen Data

Identifying differential cell populations in flow cytometry data accounting for marker frequency

Identifying genetic trait/phenotype relevant cell type/state at single cell resolution

immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"

Improves Early Build Genome Assemblies using Strand-Seq Data

Integration of CellNOptR to add missing links

Interactive SummarizedExperiment Explorer

iSEE Universe

k-nearest neighbour batch effect test

Mass Spectrometry-Based Single-Cell Proteomics Data Analysis

MetaCyto: A package for meta-analysis of cytometry data

Mismatch Tolerant Maximum Common Substructure Searching

Mixture Models for Single-Cell Assays

Modified Concordance Index

NanoString GeoMx Tools

NanoString nCounter Tools

Normalization of Single-Cell mRNA Sequencing Data

ODE add-on to CellNOptR

Open-source toolkit to analyse data from xCELLigence System (RTCA)

Perform a maximum contrast projection of 3D images along the z-dimension into 2D

Phenotypic distance measures

Phenotyping of microbial Raman spectroscopy data

Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

Precict cis-co-accessibility from single-cell chromatin accessibility data

Precise and Accurate Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis

Predict cis-co-accessibility from single-cell chromatin accessibility data

Quality control and standardization of cytometry data

Quality control for flow cytometry

Quality Control of Gated Flow Cytometry Experiments

Rank-based signature enrichment analysis for single-cell data

R bindings for cytolib c++ library

rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines

Regression Models with Multivariate Outcomes for Mass Cytometry Experiments

R interface to a subset of OpenBabel functionalities

Robust prediction of clinical outcomes using cytometry data without cell gating

S4 Class for segmented spatial 'omics data

scFeatures: Multi-view representations of single-cell and spatial data for disease outcome prediction

Similarity measures for chemical compounds

Single Cell Shiny Application for Analysing Single Cell Transcriptomics Data

Spatial analysis of in situ cytometry data

spatialHeatmap

Spatial Overlay for Omic Data from Nanostring GeoMx Data

Stability Ranking

Statistical analysis for the Colony Formation Assay

Statistical Analysis of High-Throughput Genetic Perturbation Screens

Statistical analysis of high-throughput RNAi screens

Statistical Analysis of MPRA data

Statistical methods for the analysis of flow cytometry data

Statistical tools and data structures for plate-based flow cytometry

Statistics and dIagnostic Graphs for HTS

Tools for processing of high-dimensional cytometry data

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

Using self-organizing maps for visualization and interpretation of cytometry data

Utilities for flow cytometry

Variance stabilization in flow cytometry (and microarrays)

Visualization for flow cytometry

Visualize Cytometry data with ggplot

Biocview "CellBasedAssays"

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