Global functions | |
---|---|
%:::% | Man page |
%>% | Man page |
%dopar% | Man page |
.data | Man page |
:= | Man page |
[.expt | Man page |
[[,expt,character,ANY-method | Man page |
`%:::%` | Source code |
`[.expt` | Source code |
`colors<-` | Source code |
`state<-` | Source code |
add_binary_states | Man page Source code |
add_clonotype_annotations | Man page Source code |
add_conditional_nas | Man page Source code |
all_adjusters | Man page Source code |
all_gprofiler | Man page Source code |
all_ontology_searches | Man page Source code |
all_pairwise | Man page Source code |
annotate_network | Man page Source code |
annotate_network_df | Man page Source code |
annotate_network_nodes | Source code |
annotation,expt-method | Man page |
annotation<-,expt,ANY-method | Man page |
assay,ExpressionSet,ANY-method | Man page |
assay,expt,ANY-method | Man page |
assay<-,ExpressionSet,ANY-method | Man page |
assay<-,expt,ANY-method | Man page |
backup_expression_data | Man page Source code |
backup_expression_data,ExpressionSet-method | Man page |
backup_expression_data,SummarizedExperiment-method | Man page |
backup_file | Man page Source code |
base_size | Man page |
basic_pairwise | Man page Source code |
batch_counts | Man page Source code |
binary_pairwise | Man page Source code |
bioc_all | Man page Source code |
calculate_aucc | Man page Source code |
cbcb_batch | Man page Source code |
cbcb_combat | Man page Source code |
cbcb_filter_counts | Man page Source code |
cheap_tm | Man page Source code |
check_circos | Man page Source code |
check_includes | Man page Source code |
check_metadata_year | Man page Source code |
check_plot_scale | Man page Source code |
check_single_de_table | Source code |
check_xlsx_worksheet | Man page Source code |
choose_basic_dataset | Man page Source code |
choose_binom_dataset | Man page Source code |
choose_dataset | Man page Source code |
choose_limma_dataset | Man page Source code |
choose_model | Man page Source code |
choose_sequence_regions | Man page Source code |
circos-class | Man page |
circos_arc | Man page Source code |
circos_check_chromosomes | Man page Source code |
circos_heatmap | Man page Source code |
circos_hist | Man page Source code |
circos_ideogram | Man page Source code |
circos_karyotype | Man page Source code |
circos_make | Man page Source code |
circos_plus_minus | Man page Source code |
circos_prefix | Man page Source code |
circos_suffix | Man page Source code |
circos_ticks | Man page Source code |
circos_tile | Man page Source code |
classify_n_times | Man page Source code |
classify_variants | Man page Source code |
clear_session | Man page Source code |
cleavage_histogram | Man page Source code |
cluster_trees | Man page Source code |
colData,ExpressionSet-method | Man page |
colData,expt-method | Man page |
colData<-,ExpressionSet,ANY-method | Man page |
colData<-,expt,ANY-method | Man page |
collect_gsc_ids_from_df | Source code |
color_int | Man page Source code |
colors | Man page Source code |
colors,SummarizedExperiment-method | Man page |
colors,expt-method | Man page |
colors<- | Man page |
colors<-,SummarizedExperiment-method | Man page |
colors<-,expt-method | Man page |
combine_de_tables | Man page Source code |
combine_expts | Man page Source code |
combine_extracted_plots | Man page Source code |
combine_mapped_table | Man page Source code |
combine_single_de_table | Man page Source code |
compare_batches | Man page Source code |
compare_de_results | Man page Source code |
compare_de_tables | Man page Source code |
compare_go_searches | Man page Source code |
compare_logfc_plots | Man page Source code |
compare_pc_sv | Man page Source code |
compare_significant_contrasts | Man page Source code |
compare_surrogate_estimates | Man page Source code |
concatenate_runs | Man page Source code |
convert_counts | Man page Source code |
convert_gsc_ids | Man page Source code |
convert_ids | Man page Source code |
cordist | Man page Source code |
correlate_de_tables | Man page Source code |
count_clonotype_by_cluster | Man page Source code |
count_expt_snps | Man page Source code |
count_nmer | Man page Source code |
count_nmer,character-method | Man page |
counts_from_surrogates | Man page Source code |
cp_options | Man page Source code |
create_expt | Man page Source code |
create_partitions | Man page Source code |
create_scd | Man page Source code |
create_se | Man page Source code |
de_venn | Man page Source code |
default_proper | Man page Source code |
deparse_go_value | Man page Source code |
deseq2_pairwise | Man page Source code |
deseq_lrt | Man page Source code |
deseq_pairwise | Man page Source code |
deseq_try_sv | Man page Source code |
disjunct_pvalues | Man page Source code |
dispatch_count_lines | Man page Source code |
dispatch_csv_search | Man page Source code |
dispatch_fasta_lengths | Man page Source code |
dispatch_filename_search | Man page Source code |
dispatch_gc | Man page Source code |
dispatch_metadata_extract | Man page Source code |
dispatch_metadata_ratio | Man page Source code |
dispatch_regex_search | Man page Source code |
divide_seq | Man page Source code |
do_batch | Man page Source code |
do_pairwise | Man page Source code |
do_topgo | Man page Source code |
download_gbk | Man page Source code |
download_microbesonline_files | Man page Source code |
dream_pairwise | Man page Source code |
ebseq_few | Man page Source code |
ebseq_pairwise | Man page Source code |
ebseq_pairwise_subset | Man page Source code |
ebseq_size_factors | Man page Source code |
ebseq_two | Man page Source code |
edger_pairwise | Man page Source code |
enrichResult-class | Man page |
exclude_genes_expt | Man page Source code |
exprs,SummarizedExperiment-method | Man page |
exprs,expt-method | Man page |
exprs<-,ExpressionSet,data.frame-method | Man page |
exprs<-,SummarizedExperiment,ANY-method | Man page |
exprs<-,expt,ANY-method | Man page |
expt | Man page Source code |
extract_abundant_genes | Man page Source code |
extract_coefficient_scatter | Man page Source code |
extract_de_plots | Man page Source code |
extract_go | Man page Source code |
extract_interesting_goseq | Man page Source code |
extract_keepers | Man page Source code |
extract_keepers,list,character-method | Man page |
extract_lengths | Man page Source code |
extract_mayu_pps_fdr | Man page Source code |
extract_metadata | Man page Source code |
extract_msraw_data | Man page Source code |
extract_mzML_scans | Man page Source code |
extract_mzXML_scans | Man page Source code |
extract_peprophet_data | Man page Source code |
extract_pyprophet_data | Man page Source code |
extract_scan_data | Man page Source code |
extract_siggenes | Man page Source code |
extract_significant_genes | Man page Source code |
fData,SummarizedExperiment-method | Man page |
fData,expt-method | Man page |
fData<-,SummarizedExperiment,ANY-method | Man page |
fData<-,expt,ANY-method | Man page |
factor_rsquared | Man page Source code |
features_greater_than | Man page Source code |
features_in_single_condition | Man page Source code |
features_less_than | Man page Source code |
filter_counts | Man page Source code |
filter_scd | Man page Source code |
find_subseq_target_temp | Man page Source code |
find_working_dataset | Man page Source code |
find_working_mart | Man page Source code |
flanking_sequence | Man page Source code |
gather_cp_genes | Man page Source code |
gather_eupath_utrs_padding | Man page Source code |
gather_genes_orgdb | Man page Source code |
gather_masses | Man page Source code |
gather_ontology_genes | Man page Source code |
gather_preprocessing_metadata | Man page Source code |
gather_suppa_files | Source code |
gather_utrs_padding | Man page Source code |
gather_utrs_txdb | Man page Source code |
genefilter_cv_counts | Man page Source code |
genefilter_kofa_counts | Man page Source code |
genefilter_pofa_counts | Man page Source code |
generate_expt_colors | Man page Source code |
generate_nn_groups | Man page Source code |
genomic_kmer_dist | Man page Source code |
genoplot_chromosome | Man page Source code |
getEdgeWeights | Man page Source code |
get_abundant_genes | Man page Source code |
get_backup_expression_data | Man page Source code |
get_backup_expression_data,ExpressionSet-method | Man page |
get_backup_expression_data,SummarizedExperiment-method | Man page |
get_biomart_example_gene | Source code |
get_expt_colors | Man page Source code |
get_genesizes | Man page Source code |
get_git_commit | Man page Source code |
get_group_gsva_means | Man page Source code |
get_gsvadb_names | Man page Source code |
get_identifier | Man page Source code |
get_individual_snps | Man page Source code |
get_kegg_compounds | Man page Source code |
get_kegg_genes | Man page Source code |
get_kegg_orgn | Man page Source code |
get_kegg_sub | Man page Source code |
get_microbesonline_taxid | Man page Source code |
get_msigdb_metadata | Man page Source code |
get_num_den | Source code |
get_pairwise_gene_abundances | Man page Source code |
get_plot_columns | Man page Source code |
get_proportion_snp_sets | Man page Source code |
get_res | Man page Source code |
get_sig_genes | Man page Source code |
get_sig_gsva_categories | Man page Source code |
get_snp_sets | Man page Source code |
get_vennerable_rows | Source code |
get_yyyymm_commit | Man page Source code |
gff2gr | Man page Source code |
gff2irange | Man page Source code |
ggplotly_url | Man page Source code |
ggplt | Man page Source code |
godef | Man page Source code |
golev | Man page Source code |
golevel | Man page Source code |
golevel_df | Man page Source code |
goont | Man page Source code |
gosec | Man page Source code |
goseq2enrich | Man page Source code |
goseq_msigdb | Man page Source code |
goseq_table | Man page Source code |
goseq_trees | Man page Source code |
gostats2enrich | Man page Source code |
gostats_kegg | Man page Source code |
gostats_trees | Man page Source code |
gosyn | Man page Source code |
goterm | Man page Source code |
gotest | Man page Source code |
gprofiler2enrich | Man page Source code Source code |
graph_metrics | Man page Source code |
group_mean_cds_length | Man page Source code |
guess_orgdb_keytype | Man page Source code |
heatmap.3 | Man page Source code |
hpgl_GOplot | Man page Source code |
hpgl_GroupDensity | Man page Source code |
hpgl_arescore | Man page Source code |
hpgl_cor | Man page Source code |
hpgl_dist | Man page Source code |
hpgl_filter_counts | Man page Source code |
hpgl_log2cpm | Man page Source code |
hpgl_norm | Man page Source code |
hpgl_padjust | Man page Source code |
hpgl_qshrink | Man page Source code |
hpgl_qstats | Man page Source code |
hpgl_rpkm | Man page Source code |
hpgl_topdiffgenes | Source code |
hpgl_voom | Man page Source code |
hpgl_voomweighted | Man page Source code |
hpgltools | Man page |
hpgltools-package | Man page |
iDA | Man page |
iDA,matrix-method | Man page |
ihw_adjust | Man page Source code |
import_deseq | Man page Source code |
import_edger | Man page Source code |
impute_expt | Man page Source code |
init_xlsx | Man page Source code |
intersect_signatures | Man page Source code |
intersect_significant | Man page Source code |
kegg_vector_to_df | Man page Source code |
limma_pairwise | Man page Source code |
load_annotations | Man page Source code |
load_biomart_annotations | Man page Source code |
load_biomart_go | Man page Source code |
load_biomart_orthologs | Man page Source code |
load_genbank_annotations | Man page Source code |
load_gff_annotations | Man page Source code |
load_gmt_signatures | Man page Source code |
load_kegg_annotations | Man page Source code |
load_microbesonline_annotations | Man page |
load_microbesonline_go | Man page |
load_orgdb_annotations | Man page Source code |
load_orgdb_go | Man page Source code |
load_trinotate_annotations | Man page Source code |
load_trinotate_go | Man page Source code |
load_uniprot_annotations | Man page Source code |
load_uniprot_go | Man page Source code |
loadme | Man page Source code |
local_get_value | Man page Source code |
make_assembly_spec | Man page Source code |
make_bsgenome_from_fasta | Source code |
make_dnaseq_spec | Man page Source code |
make_gsc_from_abundant | Man page Source code |
make_gsc_from_ids | Man page Source code |
make_gsc_from_pairwise | Man page Source code |
make_gsc_from_significant | Source code |
make_id2gomap | Man page Source code |
make_kegg_df | Man page Source code |
make_limma_tables | Man page Source code Source code |
make_pairwise_contrasts | Man page Source code |
make_pombe_expt | Man page Source code |
make_pombe_se | Man page Source code |
make_rnaseq_multibioproject | Source code |
make_rnaseq_spec | Man page Source code |
make_simplified_contrast_matrix | Man page Source code |
make_tx_gene_map | Man page Source code |
map_keepers | Man page Source code |
map_kegg_dbs | Man page Source code |
map_orgdb_ids | Man page Source code |
mean_by_bioreplicate | Man page Source code |
mean_by_factor | Man page Source code |
median_by_factor | Man page Source code |
merge_gff_children | Source code |
mesg | Man page Source code |
model_test | Man page Source code |
my_identifyAUBlocks | Man page |
my_isva | Man page Source code |
my_runsims | Man page |
mygetKGMLurl | Source code |
mymakeContrasts | Man page Source code |
myretrieveKGML | Man page Source code |
network_from_matrix | Man page Source code |
noiseq_pairwise | Man page Source code |
normalize | Man page Source code |
normalize_counts | Man page Source code |
normalize_expt | Man page Source code |
normalize_se | Man page Source code |
notes,expt-method | Man page |
orgdb_from_ah | Man page Source code |
overlap_geneids | Man page Source code |
overlap_groups | Man page Source code |
pData,SummarizedExperiment-method | Man page |
pData,expt-method | Man page |
pData<-,SummarizedExperiment,ANY-method | Man page |
pData<-,expt,ANY-method | Man page |
parse_msigdb | Man page Source code |
parse_msigdb_sqlite | Man page Source code |
parse_msigdb_xml | Man page Source code |
pattern_count_genome | Man page Source code |
pca_highscores | Man page Source code |
pca_information | Man page Source code |
pct_all_kegg | Man page Source code |
pct_kegg_diff | Man page Source code |
please_install | Man page Source code |
plot_3d_pca | Man page Source code |
plot_batchsv | Man page Source code |
plot_bcv | Man page Source code |
plot_boxplot | Man page Source code |
plot_cleaved | Man page Source code |
plot_corheat | Man page Source code |
plot_de_pvals | Man page Source code |
plot_density | Man page Source code |
plot_disheat | Man page Source code |
plot_dist_scatter | Man page Source code |
plot_enrichresult | Man page Source code |
plot_epitrochoid | Man page Source code |
plot_essentiality | Man page Source code |
plot_fun_venn | Man page Source code |
plot_goseq_pval | Man page Source code |
plot_gostats_pval | Man page Source code |
plot_gprofiler2_pval | Man page Source code |
plot_gprofiler_pval | Man page Source code |
plot_heatmap | Man page Source code |
plot_heatmap,ExpressionSet-method | Man page |
plot_heatmap,SummarizedExperiment-method | Man page |
plot_heatmap,data.frame-method | Man page |
plot_heatmap,expt-method | Man page |
plot_heatplus | Man page Source code |
plot_histogram | Man page Source code |
plot_hypotrochoid | Man page Source code |
plot_intensity_mz | Man page Source code |
plot_legend | Man page Source code |
plot_libsize | Man page Source code |
plot_libsize,ExpressionSet,ANY,ANY-method | Man page |
plot_libsize,SummarizedExperiment,ANY,ANY-method | Man page |
plot_libsize,data.frame,factor,character-method | Man page |
plot_libsize,expt,ANY,ANY-method | Man page |
plot_libsize_prepost | Man page Source code |
plot_linear_scatter | Man page Source code |
plot_ly | Man page |
plot_ma_condition_de | Man page Source code |
plot_ma_de | Man page Source code |
plot_meta_interactive_sankey | Source code |
plot_meta_sankey | Man page Source code |
plot_meta_sankey,expt-method | Man page |
plot_metadata_factors | Man page Source code |
plot_multihistogram | Man page Source code |
plot_multiplot | Man page Source code |
plot_mzxml_boxplot | Man page Source code |
plot_nonzero | Man page Source code |
plot_nonzero,ExpressionSet-method | Man page |
plot_nonzero,SummarizedExperiment-method | Man page |
plot_nonzero,expt-method | Man page |
plot_num_siggenes | Man page Source code |
plot_ontpval | Man page Source code |
plot_pairwise_ma | Man page Source code |
plot_pca | Man page Source code |
plot_pca_genes | Man page Source code |
plot_pcfactor | Man page Source code |
plot_pcload | Man page Source code |
plot_pcs | Man page Source code |
plot_pct_kept | Man page Source code |
plot_peprophet_data | Man page Source code |
plot_pyprophet_counts | Man page Source code |
plot_pyprophet_distribution | Man page Source code |
plot_pyprophet_points | Man page Source code |
plot_pyprophet_protein | Man page Source code |
plot_pyprophet_xy | Man page Source code |
plot_qq_all | Man page Source code |
plot_rmats | Man page Source code |
plot_rpm | Man page Source code |
plot_sample_bars | Man page Source code |
plot_sample_cvheatmap | Man page Source code |
plot_sample_heatmap | Man page Source code |
plot_sample_heatmap,ExpressionSet-method | Man page |
plot_sample_heatmap,SummarizedExperiment-method | Man page |
plot_sample_heatmap,expt-method | Man page |
plot_sankey_de | Man page Source code |
plot_scatter | Man page Source code |
plot_seurat_scatter | Man page Source code |
plot_significant_bar | Man page Source code |
plot_single_qq | Man page Source code |
plot_sm | Man page Source code |
plot_sm,ExpressionSet-method | Man page |
plot_sm,SummarizedExperiment-method | Man page |
plot_sm,data.frame-method | Man page |
plot_sm,expt-method | Man page |
plot_spirograph | Man page Source code |
plot_suppa | Man page Source code |
plot_svfactor | Man page Source code |
plot_topgo_densities | Man page Source code |
plot_topgo_pval | Man page Source code |
plot_topn | Man page Source code |
plot_tsne | Man page Source code |
plot_variance_coefficients | Man page Source code |
plot_variance_coefficients,ExpressionSet-method | Man page |
plot_variance_coefficients,SummarizedExperiment-method | Man page |
plot_variance_coefficients,expt-method | Man page |
plot_volcano_condition_de | Man page Source code |
plot_volcano_de | Man page Source code |
plotly_pca | Man page Source code |
pp | Man page Source code |
primer_qc | Man page Source code |
print.abundant_genes | Man page Source code |
print.all_gprofiler | Man page Source code |
print.all_pairwise | Man page Source code |
print.annotations_biomart | Man page Source code |
print.aucc_info | Man page Source code |
print.biomart_go | Man page Source code |
print.cds_variant_primers | Man page Source code |
print.classified_mutations | Man page Source code |
print.classifier_evaluation | Man page Source code |
print.clusterprofiler_result | Man page Source code |
print.combined_de | Man page Source code |
print.combined_table | Man page Source code |
print.correlation_heatmap | Man page Source code |
print.cross_table_comparison | Man page Source code |
print.density_plot | Man page Source code |
print.density_primers | Man page Source code |
print.deseq_lrt | Man page Source code |
print.distance_heatmap | Man page Source code |
print.expt | Man page Source code |
print.goseq_result | Man page Source code |
print.gostats_result | Man page Source code |
print.gprofiler_result | Man page Source code |
print.graphed_metrics | Man page Source code |
print.gsva_result | Man page Source code |
print.gsva_sig | Man page Source code |
print.legend_plot | Man page Source code |
print.libsize_plot | Man page Source code |
print.mapped_keepers | Man page Source code |
print.meta_sankey | Man page Source code |
print.nonzero_plot | Man page Source code |
print.partitioned_data | Man page Source code |
print.pattern_counted | Man page Source code |
print.pca_result | Man page Source code |
print.prepost_filter | Man page Source code |
print.preprocessing_metadata | Man page Source code |
print.proper_estimate | Man page Source code |
print.reordered_varpart | Man page Source code |
print.sig_genes | Man page Source code |
print.sig_intersect | Man page Source code |
print.snp_intersections | Man page Source code |
print.snp_sets | Man page Source code |
print.snps_genes | Man page Source code |
print.standardmedian_plot | Man page Source code |
print.topgo_result | Man page Source code |
print.topn_plot | Man page Source code |
print.varcoef_plot | Man page Source code |
print.varpart | Man page Source code |
print.written_expt | Man page Source code |
print.written_xlsx | Man page Source code |
print_ups_downs | Man page Source code |
proportions_by_factors | Man page Source code |
prune_network | Man page Source code |
pull_git_commit | Man page Source code |
random_ontology | Man page Source code |
rank_order_scatter | Man page Source code |
rbind_summary_rows | Man page Source code |
read_counts_expt | Man page Source code |
read_metadata | Man page Source code |
read_snp_columns | Man page Source code |
read_thermo_xlsx | Man page Source code |
recolor_points | Man page Source code |
record_seurat_samples | Man page Source code |
rename_vennerable_intersections | Source code |
renderme | Man page Source code |
replot_varpart_percent | Man page Source code |
rex | Man page Source code |
rowData,ExpressionSet-method | Man page |
rowData,expt-method | Man page |
rowData<-,expt-method | Man page |
rowMeans | Man page |
rowmax_filter_counts | Man page Source code |
s2s_all_filters | Man page Source code |
sampleNames,SummarizedExperiment-method | Man page |
sampleNames,expt-method | Man page |
sampleNames<-,SummarizedExperiment,ANY-method | Man page |
sampleNames<-,expt,ANY-method | Man page |
sanitize_expt | Man page Source code |
sanitize_expt_fData | Man page Source code |
sanitize_expt_pData | Man page Source code |
sanitize_metadata | Man page Source code |
sanitize_number_encoding | Man page Source code |
sanitize_percent | Man page Source code |
saveme | Man page Source code |
score_amino_acids | Source code |
score_gsva_likelihoods | Man page Source code |
score_mhess | Man page Source code |
self_evaluate_model | Man page Source code |
semantic_copynumber_extract | Man page Source code |
semantic_copynumber_filter | Man page Source code |
semantic_expt_filter | Man page Source code |
sequence_attributes | Man page Source code |
sequential_variants | Man page Source code |
set_expt_batches | Man page Source code |
set_expt_colors | Man page Source code |
set_expt_conditions | Man page Source code |
set_expt_factors | Man page Source code |
set_expt_genename_column | Man page Source code |
set_expt_genenames | Man page Source code |
set_expt_samplenames | Man page Source code |
shiny | Man page |
sig_ontologies | Man page Source code |
significant_barplots | Man page Source code |
sillydist | Man page Source code |
simple_clusterprofiler | Man page Source code |
simple_cp_enricher | Man page Source code |
simple_dorothea | Man page Source code |
simple_filter_counts | Man page Source code |
simple_gadem | Man page Source code |
simple_goseq | Man page Source code |
simple_gostats | Man page Source code |
simple_gprofiler | Man page Source code |
simple_gprofiler2 | Man page Source code |
simple_gprofiler_old | Man page Source code |
simple_gsva | Man page Source code |
simple_motifRG | Man page Source code |
simple_pathview | Man page Source code |
simple_proper | Man page Source code |
simple_topgo | Man page Source code |
simple_topgo,character-method | Man page |
simple_varpart | Man page Source code |
simple_xcell | Man page Source code |
single_topgo_tree | Man page Source code |
skim_seurat_metadata | Man page Source code |
slide_de_threshold | Man page Source code |
sm | Man page Source code |
snp_by_chr | Man page Source code |
snp_cds_primers | Man page Source code |
snp_density_primers | Man page Source code |
snp_subset_genes | Man page Source code |
snpnames2gr | Man page Source code |
snps_intersections | Man page Source code |
snps_vs_genes | Man page Source code |
snps_vs_genes_padded | Man page Source code |
state | Man page Source code |
state,SummarizedExperiment-method | Man page |
state,expt-method | Man page |
state<- | Man page |
state<-,SummarizedExperiment-method | Man page |
state<-,expt-method | Man page |
steal_salmon_tx_ids | Man page Source code |
subset_expt | Man page Source code |
subset_expt,SummarizedExperiment-method | Man page |
subset_genes | Man page Source code |
subset_ontology_search | Man page Source code |
subset_pyprophet_data | Source code |
subset_se | Source code |
subtract_expt | Man page Source code |
sum_eupath_exon_counts | Man page Source code |
sum_exon_widths | Man page Source code |
summarize_combined | Source code |
summarize_scd_clusters | Man page Source code |
summarize_ups_downs | Man page Source code |
sva_modify_pvalues | Man page Source code |
synchronize_expt | Man page Source code |
table_style | Man page |
tar_meta_column | Man page Source code |
tempfile | Man page Source code |
tmpmd5file | Man page Source code |
tnseq_multi_saturation | Man page Source code |
tnseq_saturation | Man page Source code |
topDiffGenes | Man page Source code |
topgo2enrich | Man page Source code |
topgo_tables | Man page Source code |
topgo_trees | Man page Source code |
transform_counts | Man page Source code |
u_plot | Man page Source code |
unAsIs | Man page Source code |
upsetr_combined_de | Man page Source code |
upsetr_sig | Man page Source code |
variance_expt | Man page Source code |
varpart_summaries | Man page Source code |
verbose | Man page |
wgcna_network | Man page Source code |
what_happened | Man page Source code |
write_basic | Man page Source code |
write_cds_entries | Man page Source code |
write_classifier_summary | Man page Source code |
write_combined_legend | Man page Source code |
write_combined_summary | Man page Source code |
write_cp_data | Man page Source code |
write_de_table | Man page Source code |
write_density_primers | Man page Source code |
write_deseq | Man page Source code |
write_edger | Man page Source code |
write_expt | Man page Source code |
write_go_xls | Man page Source code |
write_goseq_data | Man page Source code |
write_gostats_data | Man page Source code |
write_gprofiler_data | Man page Source code |
write_gsva | Man page Source code |
write_limma | Man page Source code Source code |
write_plots_de_xlsx | Source code |
write_sample_design | Man page Source code |
write_sig_legend | Man page Source code |
write_snps | Man page Source code |
write_subset_ontologies | Man page Source code |
write_suppa_table | Man page Source code |
write_topgo_data | Man page Source code |
write_venns_de_xlsx | Source code |
write_xlsx | Man page Source code |
write_xlsx,ANY,ANY,ANY,written_xlsx-method | Man page |
xlsx_insert_png | Man page Source code |
xref_regions | Man page Source code |
ymxb_print | Man page Source code |
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